Variant report

Variant	rs73561155
Chromosome Location	chr9:117983220-117983221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2418336	1.00[AMR][1000 genomes]
rs57869818	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7028078	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035499	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73553184	1.00[AMR][1000 genomes]
rs73553201	1.00[AMR][1000 genomes]
rs73555006	1.00[AMR][1000 genomes]
rs73555009	1.00[AMR][1000 genomes]
rs73555011	1.00[AMR][1000 genomes]
rs73555021	1.00[AMR][1000 genomes]
rs73556825	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556836	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556838	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73556860	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558939	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561148	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117976600-117985400	Weak transcription	Brain Hippocampus Middle	brain
2	chr9:117976600-117987400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:117979800-117984200	Weak transcription	Aorta	Aorta
4	chr9:117980400-117984600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:117980800-117988800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:117981400-117988600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:117982000-117983400	Enhancers	Fetal Lung	lung
8	chr9:117982200-117983400	Enhancers	NHEK	skin
9	chr9:117982400-117983400	Enhancers	Brain Germinal Matrix	brain
10	chr9:117982800-117983400	Enhancers	Adipose Nuclei	Adipose
11	chr9:117982800-117985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:117983200-117984200	Weak transcription	Fetal Brain Female	brain
13	chr9:117983200-117985000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:117983200-117987400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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