Variant report

Variant	rs73563901
Chromosome Location	chr9:100145621-100145622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56794875	1.00[AFR][1000 genomes]
rs58052769	1.00[AFR][1000 genomes]
rs58406146	1.00[AFR][1000 genomes]
rs61261278	1.00[AFR][1000 genomes]
rs73555962	1.00[AFR][1000 genomes]
rs73559812	1.00[AFR][1000 genomes]
rs73559829	1.00[AFR][1000 genomes]
rs73559834	1.00[AFR][1000 genomes]
rs73561895	1.00[AFR][1000 genomes]
rs73563874	1.00[AFR][1000 genomes]
rs73563896	1.00[AFR][1000 genomes]
rs73563898	1.00[AFR][1000 genomes]
rs7866453	1.00[AFR][1000 genomes]
rs7868196	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036105	chr9:100131266-100171816	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100091600-100149200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100108000-100148200	Weak transcription	Esophagus	oesophagus
3	chr9:100117600-100146400	Weak transcription	Small Intestine	intestine
4	chr9:100126600-100148400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:100127000-100148600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:100132000-100149000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:100132400-100146800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:100132600-100146800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:100132600-100148600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:100132600-100149400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:100132600-100149400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:100133400-100148400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:100134600-100148600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:100136600-100148000	Weak transcription	Colonic Mucosa	Colon
15	chr9:100138600-100146000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:100139400-100146200	Weak transcription	Aorta	Aorta
17	chr9:100139400-100148400	Weak transcription	Pancreas	Pancrea
18	chr9:100139400-100148800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:100139400-100149400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:100139800-100149400	Weak transcription	Brain Substantia Nigra	brain
21	chr9:100140000-100146000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr9:100140000-100146600	Weak transcription	Spleen	Spleen
23	chr9:100140000-100149200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:100140000-100149400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:100140000-100149400	Weak transcription	Brain Angular Gyrus	brain
26	chr9:100140000-100149400	Weak transcription	Ovary	ovary
27	chr9:100140000-100149400	Weak transcription	Right Ventricle	heart
28	chr9:100140200-100149400	Weak transcription	Brain Germinal Matrix	brain
29	chr9:100141000-100146000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:100141000-100146200	Weak transcription	Brain Anterior Caudate	brain
31	chr9:100141000-100147000	Weak transcription	Adipose Nuclei	Adipose
32	chr9:100141200-100146200	Weak transcription	Fetal Stomach	stomach
33	chr9:100141200-100147400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:100141200-100149000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:100141200-100149400	Weak transcription	Left Ventricle	heart
36	chr9:100141200-100150800	Weak transcription	Lung	lung
37	chr9:100141400-100146400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:100141400-100147400	Weak transcription	Brain Hippocampus Middle	brain
39	chr9:100141400-100148000	Weak transcription	Fetal Muscle Trunk	muscle
40	chr9:100143000-100149400	Enhancers	Fetal Intestine Large	intestine
41	chr9:100143200-100149400	Enhancers	Fetal Intestine Small	intestine
42	chr9:100143400-100148200	Enhancers	Duodenum Mucosa	Duodenum
43	chr9:100144400-100150000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr9:100144600-100145800	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr9:100145000-100146400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr9:100145200-100146400	Enhancers	Liver	Liver
47	chr9:100145200-100148400	Weak transcription	Stomach Mucosa	stomach
48	chr9:100145400-100146000	Enhancers	A549	lung
49	chr9:100145400-100148000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:100145400-100148200	Enhancers	HepG2	liver

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