Variant report

Variant	rs7357362
Chromosome Location	chr8:10916313-10916314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10096824	1.00[ASN][1000 genomes]
rs11994349	1.00[ASN][1000 genomes]
rs11997437	1.00[ASN][1000 genomes]
rs28368616	1.00[ASN][1000 genomes]
rs28510785	1.00[ASN][1000 genomes]
rs28636902	1.00[ASN][1000 genomes]
rs28654412	1.00[ASN][1000 genomes]
rs28658128	1.00[ASN][1000 genomes]
rs28670878	0.90[ASN][1000 genomes]
rs4841486	0.82[ASN][1000 genomes]
rs60363768	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1022434	chr8:10866242-10916523	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	esv3443449	chr8:10915967-10918515	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10911200-10916400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:10911600-10916400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:10912600-10916400	Weak transcription	HSMMtube	muscle
4	chr8:10913600-10916600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:10913600-10916600	Weak transcription	Lung	lung
6	chr8:10915200-10916400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:10915200-10916400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:10915200-10916600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:10915200-10916600	Weak transcription	Gastric	stomach
10	chr8:10915400-10916400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr8:10916200-10916400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr8:10916200-10916400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:10916200-10916400	Enhancers	Brain Anterior Caudate	brain
14	chr8:10916200-10916400	Enhancers	Brain Germinal Matrix	brain
15	chr8:10916200-10917400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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