Variant report

Variant	rs11997437
Chromosome Location	chr8:10918413-10918414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10086171	1.00[EUR][1000 genomes]
rs10090729	1.00[EUR][1000 genomes]
rs10092587	1.00[EUR][1000 genomes]
rs10092802	1.00[EUR][1000 genomes]
rs10093392	1.00[EUR][1000 genomes]
rs10096824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102909	1.00[EUR][1000 genomes]
rs10111601	1.00[EUR][1000 genomes]
rs11250109	1.00[EUR][1000 genomes]
rs11994349	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439107	1.00[EUR][1000 genomes]
rs17152970	1.00[EUR][1000 genomes]
rs28368616	1.00[ASN][1000 genomes]
rs28510785	1.00[ASN][1000 genomes]
rs28636902	1.00[ASN][1000 genomes]
rs28654412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28658128	1.00[ASN][1000 genomes]
rs28670878	0.90[ASN][1000 genomes]
rs28693632	1.00[EUR][1000 genomes]
rs4452763	1.00[EUR][1000 genomes]
rs4841486	0.82[ASN][1000 genomes]
rs56018525	1.00[EUR][1000 genomes]
rs57068380	1.00[EUR][1000 genomes]
rs57240497	1.00[EUR][1000 genomes]
rs58810357	1.00[EUR][1000 genomes]
rs59304760	1.00[EUR][1000 genomes]
rs60363768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530569	1.00[EUR][1000 genomes]
rs73530579	1.00[EUR][1000 genomes]
rs73530600	1.00[EUR][1000 genomes]
rs73539350	1.00[EUR][1000 genomes]
rs73539359	1.00[EUR][1000 genomes]
rs73539366	1.00[EUR][1000 genomes]
rs73539367	1.00[EUR][1000 genomes]
rs73539395	1.00[EUR][1000 genomes]
rs73541205	1.00[EUR][1000 genomes]
rs73541210	1.00[EUR][1000 genomes]
rs7357362	1.00[ASN][1000 genomes]
rs73665018	1.00[EUR][1000 genomes]
rs9657543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3443449	chr8:10915967-10918515	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10917000-10919400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:10917000-10926000	Weak transcription	Gastric	stomach
3	chr8:10917400-10923400	Weak transcription	Psoas Muscle	Psoas
4	chr8:10917400-10923400	Weak transcription	Right Atrium	heart
5	chr8:10917600-10919400	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:10917600-10921400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:10917600-10923600	Weak transcription	Brain Angular Gyrus	brain
8	chr8:10917800-10924400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:10918000-10919000	Weak transcription	HSMM	muscle
10	chr8:10918000-10919200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:10918000-10920400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:10918000-10925000	Weak transcription	Brain Anterior Caudate	brain
13	chr8:10918200-10919000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:10918200-10921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:10918200-10924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:10918400-10918800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:10918400-10918800	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:10918400-10918800	Weak transcription	Brain Substantia Nigra	brain
19	chr8:10918400-10918800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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