Variant report

Variant	rs73579458
Chromosome Location	chr16:69804764-69804765
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69797849..69800975-chr16:69802964..69805874,3	MCF-7	breast:
2	chr16:69796609..69799065-chr16:69804390..69806464,2	K562	blood:
3	chr16:69759577..69761931-chr16:69804654..69806455,3	MCF-7	breast:
4	chr16:69796345..69798404-chr16:69804172..69806496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181019	Chromatin interaction
ENSG00000262136	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10048108	0.84[EUR][1000 genomes]
rs10163235	0.84[EUR][1000 genomes]
rs10454066	0.82[EUR][1000 genomes]
rs11075733	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11075734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1139178	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11641521	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11643817	0.85[AFR][1000 genomes]
rs11643926	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11644838	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11644914	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12232410	0.82[EUR][1000 genomes]
rs12446201	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12447883	0.82[EUR][1000 genomes]
rs12595869	0.82[EUR][1000 genomes]
rs12596679	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12925371	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1437135	0.85[EUR][1000 genomes]
rs16959035	0.83[EUR][1000 genomes]
rs1800566	0.84[EUR][1000 genomes]
rs1865965	0.82[EUR][1000 genomes]
rs2196574	0.85[EUR][1000 genomes]
rs2361839	0.84[EUR][1000 genomes]
rs3743673	0.84[EUR][1000 genomes]
rs3811349	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4078387	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4464069	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4497676	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4580150	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4985418	0.82[AFR][1000 genomes]
rs4985518	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4985523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55701476	0.87[EUR][1000 genomes]
rs55863174	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55992518	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56282083	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57488237	0.83[EUR][1000 genomes]
rs57518557	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57565297	0.82[EUR][1000 genomes]
rs59295369	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60231938	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61426398	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6499253	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6499255	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs689455	0.85[EUR][1000 genomes]
rs7186002	0.85[EUR][1000 genomes]
rs7189424	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73579497	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74029403	0.82[EUR][1000 genomes]
rs8044920	0.82[AFR][1000 genomes]
rs8045682	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8046314	0.82[EUR][1000 genomes]
rs8054096	0.82[EUR][1000 genomes]
rs8059345	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9921045	0.84[EUR][1000 genomes]
rs9933526	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906823	chr16:69711533-69959223	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69797200-69806200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr16:69797200-69807000	Weak transcription	Esophagus	oesophagus
3	chr16:69797200-69807000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:69797200-69809800	Weak transcription	Small Intestine	intestine
5	chr16:69797400-69806400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69797400-69806400	Weak transcription	Brain Substantia Nigra	brain
7	chr16:69797400-69806600	Weak transcription	Brain Angular Gyrus	brain
8	chr16:69797400-69821200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr16:69797600-69806400	Weak transcription	HSMM	muscle
10	chr16:69797600-69806600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr16:69797600-69808200	Weak transcription	Primary T cells from cord blood	blood
12	chr16:69797600-69816800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:69797600-69853400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:69797800-69806200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr16:69797800-69806200	Weak transcription	Hela-S3	cervix
16	chr16:69797800-69806400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr16:69797800-69806600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr16:69797800-69806600	Weak transcription	Adipose Nuclei	Adipose
19	chr16:69797800-69806600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr16:69797800-69806600	Weak transcription	K562	blood
21	chr16:69797800-69806800	Weak transcription	NH-A	brain
22	chr16:69797800-69809200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr16:69797800-69809200	Weak transcription	A549	lung
24	chr16:69797800-69809800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr16:69797800-69821200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr16:69798000-69804800	Weak transcription	Primary B cells from cord blood	blood
27	chr16:69798000-69806400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr16:69798000-69806400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr16:69798000-69806400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr16:69798000-69806400	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr16:69798000-69806600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr16:69798000-69806600	Weak transcription	HSMMtube	muscle
33	chr16:69798000-69809200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr16:69798000-69809400	Weak transcription	Dnd41	blood
35	chr16:69798000-69810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr16:69798200-69805400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr16:69798200-69805600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr16:69798400-69806400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr16:69798600-69806400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:69800400-69805200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr16:69800600-69805600	Weak transcription	Pancreas	Pancrea
42	chr16:69800600-69806000	Weak transcription	Gastric	stomach
43	chr16:69800600-69806000	Weak transcription	Spleen	Spleen
44	chr16:69800600-69806200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:69800600-69806400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr16:69800600-69806800	Weak transcription	Fetal Muscle Leg	muscle
47	chr16:69800600-69817200	Weak transcription	Fetal Stomach	stomach
48	chr16:69800600-69817600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr16:69801600-69805600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr16:69802000-69806200	Weak transcription	Duodenum Mucosa	Duodenum

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