Variant report

Variant	rs16959035
Chromosome Location	chr16:69707645-69707646
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10048108	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10163235	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10454066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10500551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10852457	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10852458	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11075727	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11075728	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11075730	0.91[ASN][1000 genomes]
rs11075733	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11075734	0.83[EUR][1000 genomes]
rs1139178	0.86[EUR][1000 genomes]
rs11639947	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11641050	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11641233	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11641521	0.81[EUR][1000 genomes]
rs11642030	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11642115	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11643240	0.86[ASN][1000 genomes]
rs11643530	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11643926	0.84[EUR][1000 genomes]
rs11644838	0.81[EUR][1000 genomes]
rs11644914	0.80[EUR][1000 genomes]
rs11646884	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12232410	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12447326	0.86[ASN][1000 genomes]
rs12447883	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12449005	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595869	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12595878	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595927	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12596679	0.81[EUR][1000 genomes]
rs12596823	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12925371	0.87[EUR][1000 genomes]
rs13337236	0.95[ASN][1000 genomes]
rs1437135	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1437136	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16958970	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16959025	0.93[EUR][1000 genomes]
rs1800566	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1865965	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2118220	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2196574	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2217950	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2361838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2361839	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3169315	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743673	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3885612	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4078387	0.81[EUR][1000 genomes]
rs4464069	0.81[EUR][1000 genomes]
rs4580150	0.81[EUR][1000 genomes]
rs4985518	0.83[EUR][1000 genomes]
rs4985523	0.83[EUR][1000 genomes]
rs55701476	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55751101	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55863174	0.82[EUR][1000 genomes]
rs55992518	0.81[EUR][1000 genomes]
rs56316408	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57488237	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57518557	0.80[EUR][1000 genomes]
rs57565297	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60010276	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60472033	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61310815	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61426398	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61460899	0.93[ASN][1000 genomes]
rs6499239	0.95[ASN][1000 genomes]
rs6499253	0.83[EUR][1000 genomes]
rs689455	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7186002	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7189424	0.86[EUR][1000 genomes]
rs7190652	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7198242	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72783115	0.96[ASN][1000 genomes]
rs73579458	0.83[EUR][1000 genomes]
rs74026882	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74029403	0.97[EUR][1000 genomes]
rs8045142	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8045682	0.83[EUR][1000 genomes]
rs8045705	0.81[AMR][1000 genomes]
rs8046314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8047885	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8052086	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8053080	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8054000	0.91[ASN][1000 genomes]
rs8054096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8059345	0.84[EUR][1000 genomes]
rs8060588	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs920191	0.95[ASN][1000 genomes]
rs9788803	0.95[ASN][1000 genomes]
rs9788837	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9921045	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9933526	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9940548	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16959035	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
2	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
4	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:69681600-69709000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
10	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr16:69690200-69725800	Weak transcription	Ovary	ovary
12	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr16:69691400-69712400	Weak transcription	Colonic Mucosa	Colon
15	chr16:69694800-69719200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr16:69695800-69709200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr16:69697800-69710800	Weak transcription	Lung	lung
19	chr16:69699000-69711800	Weak transcription	Esophagus	oesophagus
20	chr16:69700400-69725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr16:69701400-69707800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:69701400-69717400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:69701400-69725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr16:69701600-69707800	Strong transcription	GM12878-XiMat	blood
25	chr16:69701800-69708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr16:69701800-69708000	Strong transcription	Placenta	Placenta
27	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr16:69702000-69707800	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr16:69702200-69716800	Strong transcription	HSMM	muscle
30	chr16:69702600-69707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr16:69702800-69708000	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr16:69703200-69711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr16:69703200-69713200	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr16:69703400-69710400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr16:69703400-69717600	Weak transcription	Pancreas	Pancrea
36	chr16:69703800-69707800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:69704000-69712400	Weak transcription	Brain Anterior Caudate	brain
38	chr16:69704000-69725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr16:69704600-69708000	Strong transcription	Left Ventricle	heart
40	chr16:69704600-69737800	Strong transcription	Liver	Liver
41	chr16:69704800-69708600	Weak transcription	Hela-S3	cervix
42	chr16:69705600-69709600	Weak transcription	Fetal Stomach	stomach
43	chr16:69705800-69709600	Weak transcription	HUVEC	blood vessel
44	chr16:69705800-69711800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:69705800-69711800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr16:69705800-69712000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr16:69705800-69725800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr16:69705800-69725800	Weak transcription	Gastric	stomach
49	chr16:69705800-69725800	Weak transcription	Small Intestine	intestine
50	chr16:69705800-69726000	Weak transcription	Psoas Muscle	Psoas

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