Variant report

Variant	rs55751101
Chromosome Location	chr16:69630492-69630493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69630299..69632744-chr16:69635847..69638024,2	K562	blood:
2	chr16:69624364..69627243-chr16:69629072..69631620,3	K562	blood:
3	chr16:69599613..69601834-chr16:69628546..69631333,2	MCF-7	breast:
4	chr16:69622847..69627243-chr16:69629072..69632922,5	K562	blood:

Variant related genes	Relation type
ENSG00000223109	Chromatin interaction
ENSG00000102908	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10048108	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10163235	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10454066	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10500551	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10852457	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10852458	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11075727	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11075728	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11075730	0.91[ASN][1000 genomes]
rs11639947	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11641050	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11641233	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11642030	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11642115	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11643240	0.99[ASN][1000 genomes]
rs11643530	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11646884	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11648249	0.88[ASN][1000 genomes]
rs12232410	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12447326	0.99[ASN][1000 genomes]
rs12447883	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12449005	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595869	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12595878	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595927	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12596823	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337236	0.90[ASN][1000 genomes]
rs1437135	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1437136	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16958970	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959025	0.88[EUR][1000 genomes]
rs16959035	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1800566	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1865965	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118220	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2196574	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2217950	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2361838	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2361839	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3169315	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3743673	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3885612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316408	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57488237	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57565297	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60010276	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60099379	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60472033	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61310815	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61460899	0.89[ASN][1000 genomes]
rs6499239	0.90[ASN][1000 genomes]
rs689455	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7186002	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7190652	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7196943	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7198242	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72783115	0.88[ASN][1000 genomes]
rs74026882	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029403	0.89[EUR][1000 genomes]
rs8045142	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8045705	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8046314	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8047885	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8052086	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8053080	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8054000	0.91[ASN][1000 genomes]
rs8054096	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8060588	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs920191	0.90[ASN][1000 genomes]
rs9788803	0.90[ASN][1000 genomes]
rs9788837	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9921045	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9933526	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9940548	0.99[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
3	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
4	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
6	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr16:69612400-69643800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:69614000-69643200	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:69614000-69644400	Weak transcription	Adipose Nuclei	Adipose
17	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:69617800-69646600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr16:69619800-69644800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr16:69621400-69640200	Weak transcription	Fetal Stomach	stomach
21	chr16:69622200-69645400	Weak transcription	Spleen	Spleen
22	chr16:69622400-69642000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr16:69622600-69644400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr16:69623800-69646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr16:69624000-69633600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr16:69624000-69646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr16:69624200-69638200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr16:69624200-69669600	Weak transcription	Ovary	ovary
29	chr16:69624800-69631200	Weak transcription	GM12878-XiMat	blood
30	chr16:69624800-69642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:69626200-69632000	Weak transcription	Dnd41	blood
32	chr16:69627000-69645400	Weak transcription	Placenta	Placenta
33	chr16:69627600-69642800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:69627600-69648000	Weak transcription	Lung	lung
35	chr16:69628000-69634200	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr16:69628200-69630800	Weak transcription	Liver	Liver
37	chr16:69628200-69632600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr16:69628200-69633600	Weak transcription	Brain Substantia Nigra	brain
39	chr16:69628400-69643200	Weak transcription	HSMM	muscle
40	chr16:69629000-69631400	Enhancers	Fetal Intestine Small	intestine
41	chr16:69629000-69632000	Weak transcription	Left Ventricle	heart
42	chr16:69629000-69637200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr16:69629000-69641000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
45	chr16:69629400-69631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr16:69629400-69632000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr16:69629400-69632000	Weak transcription	Right Ventricle	heart
48	chr16:69629400-69632600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr16:69629400-69646600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr16:69629400-69648000	Weak transcription	Esophagus	oesophagus

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