Variant report

Variant	rs11646884
Chromosome Location	chr16:69649098-69649099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69647740..69649767-chr16:69649772..69651715,2	MCF-7	breast:
2	chr16:69641565..69643384-chr16:69648632..69650208,2	MCF-7	breast:
3	chr16:69648184..69651671-chr16:69652285..69656345,3	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10048108	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10163235	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10454066	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10500551	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10852457	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10852458	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11075727	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11075728	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11075730	0.98[ASN][1000 genomes]
rs11075733	0.82[EUR][1000 genomes]
rs1139178	0.82[EUR][1000 genomes]
rs11639947	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11641050	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11641233	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11642030	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11642115	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11643240	0.90[ASN][1000 genomes]
rs11643530	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11643926	0.80[EUR][1000 genomes]
rs11648249	0.81[ASN][1000 genomes]
rs12232410	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12447326	0.90[ASN][1000 genomes]
rs12447883	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12449005	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595869	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12595878	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595927	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12596823	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12925371	0.83[EUR][1000 genomes]
rs13337236	0.94[ASN][1000 genomes]
rs1437135	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1437136	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16958970	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16959025	0.92[EUR][1000 genomes]
rs16959035	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1800566	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1865965	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2118220	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2196574	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2217950	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2361838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2361839	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3169315	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3743673	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3885612	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55701476	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55751101	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56316408	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57488237	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57565297	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60010276	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60099379	0.84[EUR][1000 genomes]
rs60472033	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61310815	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426398	0.82[EUR][1000 genomes]
rs61460899	0.92[ASN][1000 genomes]
rs6499239	0.94[ASN][1000 genomes]
rs689455	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7186002	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7189424	0.82[EUR][1000 genomes]
rs7190652	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7196943	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7198242	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72783115	0.92[ASN][1000 genomes]
rs74026882	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74029403	0.93[EUR][1000 genomes]
rs8045142	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8045705	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8046314	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8047885	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8052086	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8053080	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8054000	0.98[ASN][1000 genomes]
rs8054096	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8060588	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs920191	0.94[ASN][1000 genomes]
rs9788803	0.94[ASN][1000 genomes]
rs9788837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9921045	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9933526	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9940548	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11646884	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
2	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr16:69617600-69653400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69624200-69669600	Weak transcription	Ovary	ovary
7	chr16:69629200-69660000	Weak transcription	Primary B cells from cord blood	blood
8	chr16:69630000-69652000	Weak transcription	HUVEC	blood vessel
9	chr16:69633800-69653000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr16:69639400-69663400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr16:69640800-69649800	Weak transcription	Pancreas	Pancrea
12	chr16:69642800-69649200	Weak transcription	Fetal Stomach	stomach
13	chr16:69643400-69652200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr16:69643600-69650400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr16:69644000-69657200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:69644800-69666600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr16:69645000-69669600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr16:69645400-69669800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr16:69645600-69649600	Weak transcription	NHLF	lung
20	chr16:69645600-69649800	Weak transcription	Gastric	stomach
21	chr16:69645600-69652200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr16:69645600-69660400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr16:69645800-69649800	Weak transcription	Aorta	Aorta
24	chr16:69645800-69649800	Weak transcription	Left Ventricle	heart
25	chr16:69645800-69649800	Weak transcription	Psoas Muscle	Psoas
26	chr16:69645800-69649800	Weak transcription	Right Ventricle	heart
27	chr16:69645800-69649800	Weak transcription	Spleen	Spleen
28	chr16:69645800-69650000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:69645800-69652200	Weak transcription	HSMMtube	muscle
30	chr16:69645800-69661400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr16:69645800-69669600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
33	chr16:69646000-69652000	Weak transcription	Brain Germinal Matrix	brain
34	chr16:69646400-69650400	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr16:69646600-69661400	Weak transcription	NH-A	brain
36	chr16:69646800-69650000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr16:69647200-69669000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr16:69647400-69649200	Weak transcription	Liver	Liver
39	chr16:69647400-69649800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr16:69647400-69649800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr16:69647400-69649800	Weak transcription	Placenta	Placenta
42	chr16:69647400-69652200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr16:69647400-69660000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr16:69647400-69660000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr16:69647600-69649200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr16:69647600-69649200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr16:69647600-69649800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr16:69647600-69649800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr16:69647600-69652200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr16:69647600-69652200	Weak transcription	HSMM	muscle

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