Variant report

Variant	rs74029403
Chromosome Location	chr16:69710472-69710473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr16:69710238-69710492	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69709143..69710860-chr16:69736738..69738963,2	K562	blood:

Variant related genes	Relation type
NFAT5	TF binding region
ENSG00000260772	Chromatin interaction

rs_ID	r²[population]
rs10048108	0.94[EUR][1000 genomes]
rs10163235	0.94[EUR][1000 genomes]
rs10454066	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10500551	0.92[EUR][1000 genomes]
rs10852457	0.83[EUR][1000 genomes]
rs10852458	0.88[EUR][1000 genomes]
rs11075727	0.82[EUR][1000 genomes]
rs11075728	0.86[EUR][1000 genomes]
rs11075733	0.84[EUR][1000 genomes]
rs11075734	0.82[EUR][1000 genomes]
rs1139178	0.85[EUR][1000 genomes]
rs11639947	0.91[EUR][1000 genomes]
rs11641050	0.84[EUR][1000 genomes]
rs11641233	0.92[EUR][1000 genomes]
rs11642030	0.81[EUR][1000 genomes]
rs11642115	0.88[EUR][1000 genomes]
rs11643530	0.89[EUR][1000 genomes]
rs11643926	0.82[EUR][1000 genomes]
rs11646884	0.93[EUR][1000 genomes]
rs12232410	0.95[EUR][1000 genomes]
rs12447883	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12449005	0.89[EUR][1000 genomes]
rs12595869	0.96[EUR][1000 genomes]
rs12595878	0.89[EUR][1000 genomes]
rs12595927	0.86[EUR][1000 genomes]
rs12596823	0.88[EUR][1000 genomes]
rs12925371	0.85[EUR][1000 genomes]
rs1437135	0.93[EUR][1000 genomes]
rs1437136	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs16958970	0.89[EUR][1000 genomes]
rs16959025	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16959035	0.97[EUR][1000 genomes]
rs1800566	0.94[EUR][1000 genomes]
rs1865965	0.96[EUR][1000 genomes]
rs2118220	0.92[EUR][1000 genomes]
rs2196574	0.93[EUR][1000 genomes]
rs2217950	0.92[EUR][1000 genomes]
rs2361838	0.92[EUR][1000 genomes]
rs2361839	0.94[EUR][1000 genomes]
rs3169315	0.92[EUR][1000 genomes]
rs3743673	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3885612	0.89[EUR][1000 genomes]
rs4985518	0.82[EUR][1000 genomes]
rs4985523	0.82[EUR][1000 genomes]
rs55701476	0.84[EUR][1000 genomes]
rs55751101	0.89[EUR][1000 genomes]
rs55863174	0.80[EUR][1000 genomes]
rs56316408	0.93[EUR][1000 genomes]
rs57488237	0.94[EUR][1000 genomes]
rs57565297	0.96[EUR][1000 genomes]
rs60010276	0.90[EUR][1000 genomes]
rs60472033	0.93[EUR][1000 genomes]
rs61310815	0.87[EUR][1000 genomes]
rs61426398	0.84[EUR][1000 genomes]
rs6499253	0.82[EUR][1000 genomes]
rs689455	0.93[EUR][1000 genomes]
rs7186002	0.93[EUR][1000 genomes]
rs7189424	0.85[EUR][1000 genomes]
rs7190652	0.87[EUR][1000 genomes]
rs7198242	0.93[EUR][1000 genomes]
rs73579458	0.82[EUR][1000 genomes]
rs74026882	0.89[EUR][1000 genomes]
rs8045142	0.91[EUR][1000 genomes]
rs8045682	0.82[EUR][1000 genomes]
rs8046314	0.95[EUR][1000 genomes]
rs8047885	0.93[EUR][1000 genomes]
rs8052086	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8053080	0.92[EUR][1000 genomes]
rs8054096	0.95[EUR][1000 genomes]
rs8059345	0.81[EUR][1000 genomes]
rs8060588	0.93[EUR][1000 genomes]
rs9788837	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9921045	0.96[EUR][1000 genomes]
rs9933526	0.98[EUR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
3	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:69681600-69711200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:69681600-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69681600-69725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr16:69685000-69724800	Weak transcription	Fetal Heart	heart
8	chr16:69688600-69725400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr16:69690200-69725800	Weak transcription	Ovary	ovary
10	chr16:69690800-69712400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr16:69691000-69726400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr16:69691400-69712400	Weak transcription	Colonic Mucosa	Colon
13	chr16:69694800-69719200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr16:69694800-69725800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr16:69697800-69710800	Weak transcription	Lung	lung
16	chr16:69699000-69711800	Weak transcription	Esophagus	oesophagus
17	chr16:69700400-69725400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:69701400-69717400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr16:69701400-69725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr16:69701800-69739200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:69702200-69716800	Strong transcription	HSMM	muscle
22	chr16:69703200-69711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:69703200-69713200	Strong transcription	Muscle Satellite Cultured Cells	--
24	chr16:69703400-69717600	Weak transcription	Pancreas	Pancrea
25	chr16:69704000-69712400	Weak transcription	Brain Anterior Caudate	brain
26	chr16:69704000-69725400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr16:69704600-69737800	Strong transcription	Liver	Liver
28	chr16:69705800-69711800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:69705800-69711800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:69705800-69712000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:69705800-69725800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr16:69705800-69725800	Weak transcription	Gastric	stomach
33	chr16:69705800-69725800	Weak transcription	Small Intestine	intestine
34	chr16:69705800-69726000	Weak transcription	Psoas Muscle	Psoas
35	chr16:69706000-69711200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr16:69706000-69711800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr16:69706000-69712200	Weak transcription	Thymus	Thymus
38	chr16:69706000-69712400	Weak transcription	Spleen	Spleen
39	chr16:69706000-69714400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:69706000-69725000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr16:69706000-69726200	Weak transcription	Stomach Mucosa	stomach
42	chr16:69706200-69710600	Weak transcription	Stomach Smooth Muscle	stomach
43	chr16:69706200-69711400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr16:69706200-69711400	Weak transcription	Brain Hippocampus Middle	brain
45	chr16:69706200-69712600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr16:69706200-69725800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr16:69706200-69725800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr16:69706200-69725800	Weak transcription	Right Ventricle	heart
49	chr16:69706400-69711200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr16:69706400-69725800	Weak transcription	Brain Angular Gyrus	brain

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