Variant report

Variant	rs2118220
Chromosome Location	chr16:69675917-69675918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10048108	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10163235	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10454066	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10852457	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10852458	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11075727	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11075728	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11075730	0.95[ASN][1000 genomes]
rs11075733	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1139178	0.82[EUR][1000 genomes]
rs11639947	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11641050	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11641233	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11642030	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11642115	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11643240	0.90[ASN][1000 genomes]
rs11643530	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11646884	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11648249	0.81[ASN][1000 genomes]
rs12232410	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12447326	0.90[ASN][1000 genomes]
rs12447883	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12449005	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595869	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12595878	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12595927	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12596823	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12925371	0.82[EUR][1000 genomes]
rs13337236	0.99[ASN][1000 genomes]
rs1437135	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1437136	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16958970	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16959025	0.91[EUR][1000 genomes]
rs16959035	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1800566	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1865965	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2196574	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2217950	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361838	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361839	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3169315	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3743673	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3885612	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55701476	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55751101	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56316408	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57488237	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57565297	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60010276	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60099379	0.83[EUR][1000 genomes]
rs60472033	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61310815	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61426398	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61460899	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6499239	0.99[ASN][1000 genomes]
rs689455	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7186002	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7189424	0.82[EUR][1000 genomes]
rs7190652	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7196943	0.83[EUR][1000 genomes]
rs7198242	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72783115	0.98[ASN][1000 genomes]
rs74026882	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74029403	0.92[EUR][1000 genomes]
rs8045142	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8045705	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8046314	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8047885	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8052086	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053080	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054000	0.95[ASN][1000 genomes]
rs8054096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8060588	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs920191	0.99[ASN][1000 genomes]
rs9788803	0.99[ASN][1000 genomes]
rs9788837	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921045	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9933526	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9940548	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2118220	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69645800-69681000	Weak transcription	Fetal Brain Female	brain
2	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:69653600-69680800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
6	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
8	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
9	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr16:69667600-69681000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr16:69667800-69680800	Weak transcription	Colon Smooth Muscle	Colon
12	chr16:69670400-69681000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr16:69670600-69680800	Weak transcription	Gastric	stomach
14	chr16:69670600-69680800	Weak transcription	Right Ventricle	heart
15	chr16:69670600-69680800	Weak transcription	NHLF	lung
16	chr16:69670600-69689200	Weak transcription	Brain Germinal Matrix	brain
17	chr16:69670800-69680600	Weak transcription	NHEK	skin
18	chr16:69670800-69680800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr16:69670800-69680800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr16:69670800-69680800	Weak transcription	Pancreas	Pancrea
21	chr16:69670800-69681000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr16:69670800-69681000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr16:69670800-69681000	Weak transcription	Lung	lung
24	chr16:69670800-69681000	Weak transcription	Ovary	ovary
25	chr16:69670800-69681000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr16:69670800-69681000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr16:69670800-69681000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr16:69670800-69681000	Weak transcription	K562	blood
29	chr16:69670800-69689600	Weak transcription	Esophagus	oesophagus
30	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
31	chr16:69671000-69676200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:69671000-69677800	Weak transcription	Liver	Liver
33	chr16:69671000-69680800	Weak transcription	Colonic Mucosa	Colon
34	chr16:69671000-69680800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr16:69671000-69680800	Weak transcription	Small Intestine	intestine
36	chr16:69671000-69680800	Weak transcription	Hela-S3	cervix
37	chr16:69671000-69681000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:69671000-69681000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr16:69671000-69681000	Weak transcription	Fetal Kidney	kidney
40	chr16:69671200-69680800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr16:69671200-69680800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr16:69671200-69680800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr16:69671200-69680800	Weak transcription	Adipose Nuclei	Adipose
44	chr16:69671200-69680800	Weak transcription	Brain Hippocampus Middle	brain
45	chr16:69671200-69680800	Weak transcription	Dnd41	blood
46	chr16:69671200-69680800	Weak transcription	HSMM	muscle
47	chr16:69671200-69681000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr16:69671200-69689600	Weak transcription	Spleen	Spleen
49	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr16:69671400-69680800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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