Variant report

Variant	rs6499239
Chromosome Location	chr16:69686748-69686749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:69686695-69686775	K562	blood:	n/a	n/a

Variant related genes	Relation type
NFAT5	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10048108	0.91[ASN][1000 genomes]
rs10163235	0.92[ASN][1000 genomes]
rs10454066	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10500551	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10852457	0.84[ASN][1000 genomes]
rs10852458	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11075728	0.96[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11075730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11639947	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11641050	0.87[ASN][1000 genomes]
rs11641233	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11642030	0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11642115	0.86[ASN][1000 genomes]
rs11643240	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11643530	0.90[ASN][1000 genomes]
rs11646884	0.94[ASN][1000 genomes]
rs12232410	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12447326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12447883	0.90[ASN][1000 genomes]
rs12449005	0.90[ASN][1000 genomes]
rs12595869	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12595878	0.90[ASN][1000 genomes]
rs12595927	0.86[ASN][1000 genomes]
rs12596823	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13337236	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437135	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1437136	0.99[ASN][1000 genomes]
rs16958970	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16959035	0.95[ASN][1000 genomes]
rs1800566	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1865965	0.92[ASN][1000 genomes]
rs2118220	0.99[ASN][1000 genomes]
rs2196574	0.92[ASN][1000 genomes]
rs2217950	0.99[ASN][1000 genomes]
rs2361838	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2361839	0.88[ASN][1000 genomes]
rs3169315	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3743673	0.92[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs3885612	0.90[ASN][1000 genomes]
rs55751101	0.90[ASN][1000 genomes]
rs56316408	0.95[ASN][1000 genomes]
rs57488237	0.91[ASN][1000 genomes]
rs57565297	0.92[ASN][1000 genomes]
rs60010276	0.98[ASN][1000 genomes]
rs60472033	0.99[ASN][1000 genomes]
rs61310815	0.98[ASN][1000 genomes]
rs61460899	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689455	0.92[ASN][1000 genomes]
rs7186002	0.94[ASN][1000 genomes]
rs7190652	0.86[ASN][1000 genomes]
rs7196943	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs7198242	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs72783115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74026882	0.90[ASN][1000 genomes]
rs8045142	0.99[ASN][1000 genomes]
rs8046314	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8047885	0.98[ASN][1000 genomes]
rs8052086	0.99[ASN][1000 genomes]
rs8053080	0.99[ASN][1000 genomes]
rs8054000	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8054096	0.98[ASN][1000 genomes]
rs8060588	0.95[ASN][1000 genomes]
rs920191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788803	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788837	0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9921045	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9933526	0.92[ASN][1000 genomes]
rs9940548	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
4	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
6	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
7	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr16:69670600-69689200	Weak transcription	Brain Germinal Matrix	brain
9	chr16:69670800-69689600	Weak transcription	Esophagus	oesophagus
10	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
11	chr16:69671200-69689600	Weak transcription	Spleen	Spleen
12	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:69671400-69689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
15	chr16:69679400-69690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:69680400-69699000	Strong transcription	Placenta	Placenta
17	chr16:69680400-69699200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr16:69680600-69691000	Strong transcription	HMEC	breast
19	chr16:69680600-69691000	Strong transcription	HUVEC	blood vessel
20	chr16:69680600-69699200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:69680800-69690800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr16:69680800-69691000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:69680800-69691000	Strong transcription	HepG2	liver
24	chr16:69680800-69691200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr16:69680800-69691200	Strong transcription	HSMM	muscle
26	chr16:69680800-69691400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr16:69680800-69691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr16:69680800-69694400	Strong transcription	Fetal Lung	lung
29	chr16:69680800-69695800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr16:69680800-69698600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:69680800-69699000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:69680800-69699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr16:69680800-69699200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr16:69680800-69699200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr16:69680800-69699200	Strong transcription	Liver	Liver
36	chr16:69681000-69691400	Strong transcription	Osteobl	bone
37	chr16:69681000-69697200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr16:69681000-69699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr16:69681400-69687000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr16:69681400-69689400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr16:69681400-69689400	Weak transcription	Pancreas	Pancrea
42	chr16:69681400-69689600	Weak transcription	Colonic Mucosa	Colon
43	chr16:69681400-69689600	Weak transcription	Gastric	stomach
44	chr16:69681400-69689600	Weak transcription	Lung	lung
45	chr16:69681400-69705200	Weak transcription	Small Intestine	intestine
46	chr16:69681600-69686800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr16:69681600-69686800	Weak transcription	K562	blood
48	chr16:69681600-69687000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr16:69681600-69687000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr16:69681600-69687000	Weak transcription	Fetal Muscle Trunk	muscle

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