Variant report

Variant	rs920191
Chromosome Location	chr16:69689120-69689121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10048108	0.91[ASN][1000 genomes]
rs10163235	0.92[ASN][1000 genomes]
rs10454066	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10500551	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10852457	0.84[ASN][1000 genomes]
rs10852458	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11075728	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11075730	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11639947	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11641050	0.87[ASN][1000 genomes]
rs11641233	0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes]
rs11642030	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11642115	0.86[ASN][1000 genomes]
rs11643240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11643530	0.90[ASN][1000 genomes]
rs11646884	0.94[ASN][1000 genomes]
rs12232410	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.92[ASN][1000 genomes]
rs12447326	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12447883	0.90[ASN][1000 genomes]
rs12449005	0.90[ASN][1000 genomes]
rs12595869	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12595878	0.90[ASN][1000 genomes]
rs12595927	0.86[ASN][1000 genomes]
rs12596823	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13337236	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437135	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1437136	0.99[ASN][1000 genomes]
rs16958970	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16959035	0.95[ASN][1000 genomes]
rs1800566	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1865965	0.92[ASN][1000 genomes]
rs2118220	0.99[ASN][1000 genomes]
rs2161631	0.81[JPT][hapmap]
rs2196574	0.92[ASN][1000 genomes]
rs2217950	0.99[ASN][1000 genomes]
rs2361838	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2361839	0.88[ASN][1000 genomes]
rs3169315	0.95[CHB][hapmap];0.98[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[ASN][1000 genomes]
rs3743673	0.91[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs3885612	0.90[ASN][1000 genomes]
rs55751101	0.90[ASN][1000 genomes]
rs56316408	0.95[ASN][1000 genomes]
rs57488237	0.91[ASN][1000 genomes]
rs57565297	0.92[ASN][1000 genomes]
rs60010276	0.98[ASN][1000 genomes]
rs60472033	0.99[ASN][1000 genomes]
rs61310815	0.98[ASN][1000 genomes]
rs61460899	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6499239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs689455	0.92[ASN][1000 genomes]
rs7186002	0.94[ASN][1000 genomes]
rs7190652	0.86[ASN][1000 genomes]
rs7196943	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7198242	0.95[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7200935	0.82[CHD][hapmap]
rs72783115	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs74026882	0.90[ASN][1000 genomes]
rs8045142	0.99[ASN][1000 genomes]
rs8046314	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8047885	0.98[ASN][1000 genomes]
rs8052086	0.99[ASN][1000 genomes]
rs8053080	0.99[ASN][1000 genomes]
rs8054000	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8054096	0.98[ASN][1000 genomes]
rs8060588	0.95[ASN][1000 genomes]
rs9788803	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788837	0.91[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs9921045	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9929720	0.82[CHD][hapmap]
rs9933526	0.92[ASN][1000 genomes]
rs9940548	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs920191	TPPP3	cis	parietal	SCAN
rs920191	SLC7A6	cis	cerebellum	SCAN
rs920191	CES2	cis	cerebellum	SCAN
rs920191	TPPP3	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69647600-69705000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:69653600-69689600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr16:69654200-69703600	Weak transcription	Brain Angular Gyrus	brain
4	chr16:69654200-69705600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:69654600-69705000	Weak transcription	Psoas Muscle	Psoas
6	chr16:69660400-69709600	Weak transcription	Fetal Brain Male	brain
7	chr16:69667000-69727600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr16:69670600-69689200	Weak transcription	Brain Germinal Matrix	brain
9	chr16:69670800-69689600	Weak transcription	Esophagus	oesophagus
10	chr16:69670800-69715400	Weak transcription	Aorta	Aorta
11	chr16:69671200-69689600	Weak transcription	Spleen	Spleen
12	chr16:69671200-69726400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr16:69671400-69689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:69678800-69705600	Weak transcription	Stomach Mucosa	stomach
15	chr16:69679400-69690400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:69680400-69699000	Strong transcription	Placenta	Placenta
17	chr16:69680400-69699200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr16:69680600-69691000	Strong transcription	HMEC	breast
19	chr16:69680600-69691000	Strong transcription	HUVEC	blood vessel
20	chr16:69680600-69699200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:69680800-69690800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr16:69680800-69691000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:69680800-69691000	Strong transcription	HepG2	liver
24	chr16:69680800-69691200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr16:69680800-69691200	Strong transcription	HSMM	muscle
26	chr16:69680800-69691400	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr16:69680800-69691400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr16:69680800-69694400	Strong transcription	Fetal Lung	lung
29	chr16:69680800-69695800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr16:69680800-69698600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr16:69680800-69699000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr16:69680800-69699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr16:69680800-69699200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr16:69680800-69699200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr16:69680800-69699200	Strong transcription	Liver	Liver
36	chr16:69681000-69691400	Strong transcription	Osteobl	bone
37	chr16:69681000-69697200	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr16:69681000-69699200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr16:69681400-69689400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr16:69681400-69689400	Weak transcription	Pancreas	Pancrea
41	chr16:69681400-69689600	Weak transcription	Colonic Mucosa	Colon
42	chr16:69681400-69689600	Weak transcription	Gastric	stomach
43	chr16:69681400-69689600	Weak transcription	Lung	lung
44	chr16:69681400-69705200	Weak transcription	Small Intestine	intestine
45	chr16:69681600-69689400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr16:69681600-69689400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr16:69681600-69689400	Weak transcription	Thymus	Thymus
48	chr16:69681600-69689600	Weak transcription	Ovary	ovary
49	chr16:69681600-69689800	Weak transcription	Right Ventricle	heart
50	chr16:69681600-69703000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links