Variant report

Variant	rs11642115
Chromosome Location	chr16:69619084-69619085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:69611856..69614531-chr16:69617807..69619418,2	K562	blood:
2	chr16:69615958..69618176-chr16:69618325..69620737,2	K562	blood:
3	chr16:69618114..69619949-chr16:69626325..69629479,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10048108	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10163235	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10454066	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10500551	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10852457	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10852458	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11075727	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11075728	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11075730	0.88[ASN][1000 genomes]
rs11639947	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11641050	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11641233	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11642030	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11643240	0.96[ASN][1000 genomes]
rs11643530	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11646884	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11648249	0.85[ASN][1000 genomes]
rs12232410	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12447326	0.96[ASN][1000 genomes]
rs12447883	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12449005	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595869	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12595878	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12596823	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13337236	0.86[ASN][1000 genomes]
rs1437135	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1437136	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16958970	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16959025	0.87[EUR][1000 genomes]
rs16959035	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1800566	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1865965	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2118220	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2196574	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2217950	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2287970	0.80[ASN][1000 genomes]
rs2361838	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2361839	0.86[EUR][1000 genomes]
rs3169315	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3743673	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3885612	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55751101	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56256040	0.82[ASN][1000 genomes]
rs56316408	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57488237	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57565297	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60010276	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60099379	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60472033	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61310815	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61460899	0.86[ASN][1000 genomes]
rs6499239	0.86[ASN][1000 genomes]
rs689455	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7186002	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7190652	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196943	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7198242	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72783115	0.85[ASN][1000 genomes]
rs74026882	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74029403	0.88[EUR][1000 genomes]
rs8045142	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8045705	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8046314	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8047885	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8052086	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8053080	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8054000	0.88[ASN][1000 genomes]
rs8054096	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8060588	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs920191	0.86[ASN][1000 genomes]
rs9788803	0.86[ASN][1000 genomes]
rs9788837	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9921045	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9933526	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9940548	0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11642115	LOC440348	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69602000-69633000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr16:69602200-69619400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr16:69602200-69622000	Weak transcription	Gastric	stomach
4	chr16:69602200-69627000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr16:69602200-69628600	Weak transcription	Right Atrium	heart
6	chr16:69602200-69631600	Weak transcription	Pancreas	Pancrea
7	chr16:69602200-69643200	Weak transcription	Fetal Muscle Leg	muscle
8	chr16:69602200-69646600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:69602200-69653600	Weak transcription	Fetal Thymus	thymus
10	chr16:69602600-69628600	Weak transcription	Thymus	Thymus
11	chr16:69602600-69628800	Weak transcription	Right Ventricle	heart
12	chr16:69602600-69629600	Weak transcription	HSMMtube	muscle
13	chr16:69602600-69630200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:69602600-69630800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr16:69602800-69627800	Weak transcription	Fetal Kidney	kidney
16	chr16:69602800-69629200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:69603000-69627800	Weak transcription	Brain Substantia Nigra	brain
18	chr16:69603000-69647400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr16:69603200-69627800	Weak transcription	Primary B cells from cord blood	blood
20	chr16:69603200-69629600	Weak transcription	NH-A	brain
21	chr16:69603400-69623600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:69603600-69619400	Weak transcription	K562	blood
23	chr16:69603600-69625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:69603600-69627000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr16:69603600-69629200	Weak transcription	HUVEC	blood vessel
26	chr16:69603600-69660000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr16:69604000-69620000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:69604000-69627800	Weak transcription	Fetal Lung	lung
29	chr16:69604000-69628000	Weak transcription	Primary T cells from cord blood	blood
30	chr16:69604000-69629000	Weak transcription	NHLF	lung
31	chr16:69604400-69619200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr16:69605400-69619400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:69605400-69629200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr16:69605400-69663200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr16:69605600-69660600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr16:69609600-69627400	Weak transcription	Fetal Intestine Large	intestine
37	chr16:69610000-69623400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr16:69610600-69629200	Weak transcription	Aorta	Aorta
39	chr16:69610800-69619600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr16:69610800-69621200	Weak transcription	Ovary	ovary
41	chr16:69610800-69623200	Weak transcription	Psoas Muscle	Psoas
42	chr16:69610800-69628600	Weak transcription	Left Ventricle	heart
43	chr16:69610800-69630800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr16:69610800-69642000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr16:69611000-69628000	Weak transcription	Brain Angular Gyrus	brain
46	chr16:69611000-69628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:69611000-69629200	Weak transcription	HMEC	breast
48	chr16:69611200-69627800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr16:69611200-69645600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr16:69611400-69622800	Weak transcription	Rectal Mucosa Donor 29	rectum

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