Variant report

Variant	rs73582508
Chromosome Location	chr8:35985623-35985624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16884592	0.82[AFR][1000 genomes]
rs2464379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2702489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2843913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2843927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35923851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592015	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35983600-35989200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:35985000-35985800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr8:35985000-35985800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:35985000-35985800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:35985200-35985800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr8:35985200-35985800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:35985400-35985800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:35985600-35985800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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