Variant report

Variant	rs73584426
Chromosome Location	chr11:120750225-120750226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120748502..120750691-chr11:120774728..120776909,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17124754	1.00[AMR][1000 genomes]
rs35940088	1.00[AMR][1000 genomes]
rs73584407	1.00[AMR][1000 genomes]
rs73584413	1.00[AMR][1000 genomes]
rs73584417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584436	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584439	1.00[AMR][1000 genomes]
rs73584447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120729200-120751200	Weak transcription	Ovary	ovary
2	chr11:120738600-120755600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:120739200-120755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:120740200-120752400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120740400-120752600	Weak transcription	Fetal Brain Male	brain
6	chr11:120745000-120752400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:120745000-120754200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:120746200-120754600	Weak transcription	Spleen	Spleen
9	chr11:120747200-120750800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:120747200-120752200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:120747200-120752600	Weak transcription	Brain Angular Gyrus	brain
12	chr11:120747200-120753600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:120747200-120753800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:120747200-120754000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:120747200-120754400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:120747200-120754600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:120747600-120750400	Weak transcription	Brain Anterior Caudate	brain
19	chr11:120747600-120753800	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:120748400-120756600	Weak transcription	Fetal Lung	lung
21	chr11:120750200-120751000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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