Variant report

Variant	rs73584447
Chromosome Location	chr11:120757140-120757141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17124754	1.00[AMR][1000 genomes]
rs35940088	1.00[AMR][1000 genomes]
rs73584407	1.00[AMR][1000 genomes]
rs73584413	1.00[AMR][1000 genomes]
rs73584417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:120754400-120760000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:120754800-120783600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:120755000-120757200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:120755400-120764800	Weak transcription	Fetal Brain Male	brain
6	chr11:120756600-120757400	Strong transcription	Fetal Lung	lung
7	chr11:120757000-120757200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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