Variant report

Variant	rs73584436
Chromosome Location	chr11:120753518-120753519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17124754	1.00[AMR][1000 genomes]
rs35940088	1.00[AMR][1000 genomes]
rs73584407	1.00[AMR][1000 genomes]
rs73584413	1.00[AMR][1000 genomes]
rs73584417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584425	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584426	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584439	1.00[AMR][1000 genomes]
rs73584447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120738600-120755600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:120739200-120755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:120745000-120754200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:120746200-120754600	Weak transcription	Spleen	Spleen
5	chr11:120747200-120753600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:120747200-120753800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120747200-120754000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:120747200-120754400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:120747200-120754600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:120747600-120753800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:120748400-120756600	Weak transcription	Fetal Lung	lung
13	chr11:120750800-120754000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:120751200-120753600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:120751400-120753800	Weak transcription	Right Atrium	heart
16	chr11:120751800-120753800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:120751800-120753800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:120752200-120753800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:120752200-120754600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:120752200-120755400	Enhancers	Fetal Brain Female	brain
21	chr11:120752400-120754000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:120752400-120754000	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr11:120752400-120755600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr11:120752600-120754200	Weak transcription	NHDF-Ad	bronchial
25	chr11:120752600-120755400	Enhancers	Fetal Brain Male	brain
26	chr11:120752600-120755800	Enhancers	Brain Germinal Matrix	brain
27	chr11:120752800-120754000	Weak transcription	NH-A	brain
28	chr11:120752800-120754200	Weak transcription	Fetal Kidney	kidney
29	chr11:120752800-120755600	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr11:120753000-120754000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:120753000-120754000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:120753200-120754600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:120753400-120753800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:120753400-120754800	Enhancers	Brain Anterior Caudate	brain

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