Variant report

Variant	rs73591120
Chromosome Location	chr6:144650982-144650983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144641871..144646816-chr6:144650336..144652619,4	MCF-7	breast:
2	chr6:144619076..144621180-chr6:144649818..144652128,2	MCF-7	breast:
3	chr6:144647226..144649891-chr6:144650190..144651852,2	MCF-7	breast:
4	chr6:144604459..144608309-chr6:144650515..144653848,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152818	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1474627	0.91[AFR][1000 genomes]
rs1474628	0.91[AFR][1000 genomes]
rs2179338	0.85[AMR][1000 genomes]
rs2179339	0.85[AMR][1000 genomes]
rs56154144	0.91[AFR][1000 genomes]
rs58684675	0.91[AFR][1000 genomes]
rs58756941	0.96[AFR][1000 genomes]
rs59084029	0.85[AMR][1000 genomes]
rs60083419	0.85[AMR][1000 genomes]
rs60104486	0.91[AFR][1000 genomes]
rs60318438	0.85[AMR][1000 genomes]
rs61112175	0.91[AFR][1000 genomes]
rs6570622	0.91[AFR][1000 genomes]
rs6912024	0.85[AMR][1000 genomes]
rs6912336	0.85[AMR][1000 genomes]
rs73585069	0.85[AMR][1000 genomes]
rs73585072	0.85[AMR][1000 genomes]
rs73585080	0.85[AMR][1000 genomes]
rs73585083	0.85[AMR][1000 genomes]
rs73585088	0.85[AMR][1000 genomes]
rs73585090	0.85[AMR][1000 genomes]
rs73585093	0.85[AMR][1000 genomes]
rs73585102	0.85[AMR][1000 genomes]
rs73586908	0.85[AMR][1000 genomes]
rs73586910	0.85[AMR][1000 genomes]
rs73586913	0.85[AMR][1000 genomes]
rs73591137	0.91[AFR][1000 genomes]
rs73591143	0.96[AFR][1000 genomes]
rs73591144	0.91[AFR][1000 genomes]
rs73592819	0.96[AFR][1000 genomes]
rs73592834	0.80[AFR][1000 genomes]
rs7745952	0.85[AMR][1000 genomes]
rs7761266	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144635000-144651000	Weak transcription	Small Intestine	intestine
2	chr6:144636000-144656200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:144636600-144654800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:144636800-144654800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:144636800-144656400	Weak transcription	Brain Substantia Nigra	brain
6	chr6:144637000-144651800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:144639600-144660200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:144642200-144654800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:144642200-144655200	Weak transcription	Thymus	Thymus
10	chr6:144642200-144659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:144643200-144651600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:144643600-144651200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:144643600-144652600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:144643600-144656400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:144643800-144652000	Weak transcription	HSMM	muscle
16	chr6:144643800-144663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:144644400-144652600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:144644400-144652600	Weak transcription	NHDF-Ad	bronchial
19	chr6:144646200-144651400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:144646400-144655200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:144646800-144652000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:144646800-144654600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:144647800-144651800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr6:144647800-144651800	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:144648200-144652800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:144648200-144661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:144648400-144651000	Weak transcription	Gastric	stomach
28	chr6:144648600-144652200	Weak transcription	NHLF	lung
29	chr6:144648800-144651000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:144648800-144651000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:144648800-144651000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:144648800-144651000	Weak transcription	Psoas Muscle	Psoas
33	chr6:144648800-144651200	Weak transcription	Right Ventricle	heart
34	chr6:144648800-144651800	Weak transcription	HSMMtube	muscle
35	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
36	chr6:144649000-144651000	Weak transcription	Fetal Kidney	kidney
37	chr6:144649200-144651000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:144649200-144651000	Weak transcription	Esophagus	oesophagus
39	chr6:144649200-144651000	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:144649200-144651000	Weak transcription	Lung	lung
41	chr6:144649200-144651200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:144649200-144651200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:144649200-144651200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:144649400-144651200	Weak transcription	Placenta	Placenta
45	chr6:144649400-144652400	Weak transcription	Osteobl	bone
46	chr6:144649400-144652600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr6:144649400-144652800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr6:144649400-144660000	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:144649600-144651000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:144649600-144651200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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