Variant report

Variant	rs58756941
Chromosome Location	chr6:144665877-144665878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1474627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474628	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56154144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58684675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60104486	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61112175	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591120	0.96[AFR][1000 genomes]
rs73591137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591144	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592834	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592848	0.87[AMR][1000 genomes]
rs7748561	0.87[AMR][1000 genomes]
rs7749006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
2	chr6:144652000-144668200	Weak transcription	Aorta	Aorta
3	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:144656000-144668400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:144656000-144670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:144657000-144670800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:144657800-144666400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:144658200-144668200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:144658400-144670400	Weak transcription	Fetal Lung	lung
10	chr6:144660000-144667800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:144660200-144667600	Weak transcription	Placenta	Placenta
12	chr6:144660400-144668200	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:144660400-144670800	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:144661000-144666600	Enhancers	Stomach Mucosa	stomach
15	chr6:144661600-144666400	Weak transcription	Spleen	Spleen
16	chr6:144661600-144670400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:144661600-144670800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:144661800-144670800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:144662800-144668000	Weak transcription	HSMMtube	muscle
20	chr6:144663200-144668200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
22	chr6:144663400-144668200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:144663400-144675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:144663600-144667400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:144663600-144667400	Weak transcription	Hela-S3	cervix
26	chr6:144663600-144667600	Weak transcription	NHLF	lung
27	chr6:144663600-144668400	Weak transcription	Gastric	stomach
28	chr6:144664000-144666000	Enhancers	Liver	Liver
29	chr6:144664000-144667000	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr6:144664000-144667000	Flanking Active TSS	Dnd41	blood
31	chr6:144664200-144666000	Enhancers	Fetal Kidney	kidney
32	chr6:144664200-144666600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:144664200-144667800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:144664400-144666000	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr6:144664400-144666400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:144664400-144666800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:144664600-144666200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:144664600-144666400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:144664600-144666600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr6:144664600-144668200	Weak transcription	Esophagus	oesophagus
41	chr6:144664800-144666000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr6:144664800-144666000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:144664800-144666000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:144664800-144666000	Active TSS	Fetal Muscle Leg	muscle
45	chr6:144664800-144666200	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr6:144664800-144666200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr6:144664800-144666200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:144664800-144666400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr6:144664800-144666400	Active TSS	Right Atrium	heart
50	chr6:144664800-144666600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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