Variant report

Variant	rs6941232
Chromosome Location	chr6:144670803-144670804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1474627	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474628	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56154144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58684675	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58756941	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60104486	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61112175	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570622	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591143	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591144	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592819	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592834	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592848	0.87[AMR][1000 genomes]
rs7748561	0.87[AMR][1000 genomes]
rs7749006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
2	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
4	chr6:144663400-144675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
6	chr6:144666000-144671000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:144666800-144671000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:144667000-144671000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:144667000-144671000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:144667600-144671400	Enhancers	Right Atrium	heart
11	chr6:144667600-144674800	Enhancers	Primary B cells from peripheral blood	blood
12	chr6:144668200-144671000	Enhancers	Left Ventricle	heart
13	chr6:144668600-144671400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:144668800-144671000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:144668800-144672400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:144668800-144672600	Weak transcription	Esophagus	oesophagus
17	chr6:144668800-144673000	Weak transcription	Brain Angular Gyrus	brain
18	chr6:144668800-144673000	Weak transcription	Placenta	Placenta
19	chr6:144668800-144681600	Weak transcription	Small Intestine	intestine
20	chr6:144669000-144672600	Weak transcription	HSMMtube	muscle
21	chr6:144669400-144672600	Weak transcription	Right Ventricle	heart
22	chr6:144669400-144673000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:144669800-144671400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:144670200-144671400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:144670200-144671400	Enhancers	Adipose Nuclei	Adipose
26	chr6:144670200-144671400	Enhancers	Fetal Thymus	thymus
27	chr6:144670400-144671000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:144670400-144671000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:144670400-144671000	Enhancers	Gastric	stomach
30	chr6:144670400-144671000	Enhancers	Lung	lung
31	chr6:144670400-144671000	Enhancers	NH-A	brain
32	chr6:144670400-144671200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:144670400-144671200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:144670400-144671200	Enhancers	Fetal Lung	lung
35	chr6:144670400-144671200	Enhancers	Fetal Muscle Leg	muscle
36	chr6:144670400-144671200	Enhancers	Pancreas	Pancrea
37	chr6:144670400-144671200	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:144670400-144671200	Enhancers	Spleen	Spleen
39	chr6:144670400-144671800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:144670400-144671800	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:144670400-144672000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:144670400-144672200	Enhancers	Liver	Liver
43	chr6:144670400-144672200	Enhancers	Osteobl	bone
44	chr6:144670400-144673400	Flanking Active TSS	HUVEC	blood vessel
45	chr6:144670400-144674000	Flanking Active TSS	Dnd41	blood
46	chr6:144670400-144674200	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr6:144670400-144674200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr6:144670600-144671000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr6:144670600-144671200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr6:144670600-144671400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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