Variant report

Variant	rs73592848
Chromosome Location	chr6:144672805-144672806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144671254..144672966-chr6:144680487..144682454,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12661969	0.99[AFR][1000 genomes]
rs1474627	0.87[AMR][1000 genomes]
rs1474628	0.87[AMR][1000 genomes]
rs56154144	0.87[AMR][1000 genomes]
rs58684675	0.87[AMR][1000 genomes]
rs58756941	0.87[AMR][1000 genomes]
rs60104486	0.87[AMR][1000 genomes]
rs61112175	0.87[AMR][1000 genomes]
rs6570622	0.87[AMR][1000 genomes]
rs6941232	0.87[AMR][1000 genomes]
rs73591137	0.87[AMR][1000 genomes]
rs73591143	0.87[AMR][1000 genomes]
rs73591144	0.87[AMR][1000 genomes]
rs73592819	0.87[AMR][1000 genomes]
rs73592834	0.87[AMR][1000 genomes]
rs7748561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7749006	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
3	chr6:144663400-144675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
5	chr6:144667600-144674800	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:144668800-144673000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:144668800-144673000	Weak transcription	Placenta	Placenta
8	chr6:144668800-144681600	Weak transcription	Small Intestine	intestine
9	chr6:144669400-144673000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:144670400-144673400	Flanking Active TSS	HUVEC	blood vessel
11	chr6:144670400-144674000	Flanking Active TSS	Dnd41	blood
12	chr6:144670400-144674200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr6:144670400-144674200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:144670600-144673200	Genic enhancers	HepG2	liver
15	chr6:144670800-144673200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:144670800-144673400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr6:144670800-144673400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr6:144670800-144673400	Enhancers	Fetal Heart	heart
19	chr6:144670800-144673600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr6:144670800-144673800	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr6:144670800-144673800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr6:144670800-144673800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:144670800-144674200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:144670800-144691200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:144671000-144673000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:144671000-144673000	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr6:144671000-144681600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:144671000-144683200	Weak transcription	Gastric	stomach
29	chr6:144671200-144673000	Weak transcription	Fetal Lung	lung
30	chr6:144671200-144673000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:144671200-144673600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:144671200-144674800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:144671200-144675200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:144671200-144692000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:144671400-144673000	Enhancers	Brain Anterior Caudate	brain
36	chr6:144671400-144675200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:144671400-144675400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:144671400-144681600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:144671400-144681600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:144671600-144673600	Weak transcription	Fetal Kidney	kidney
41	chr6:144671600-144675400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:144671800-144673000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:144671800-144673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:144671800-144673000	Weak transcription	NH-A	brain
45	chr6:144671800-144673800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:144671800-144673800	Enhancers	Fetal Thymus	thymus
47	chr6:144671800-144675200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:144671800-144681600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:144671800-144683200	Weak transcription	HSMM	muscle
50	chr6:144671800-144685200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links