Variant report

Variant	rs73592834
Chromosome Location	chr6:144669948-144669949
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144662894..144665141-chr6:144667747..144670464,2	K562	blood:
2	chr6:144666184..144667991-chr6:144668278..144670719,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1474627	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1474628	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56154144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58684675	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58756941	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60104486	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61112175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570622	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6941232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591120	0.80[AFR][1000 genomes]
rs73591137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591143	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592819	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73592848	0.87[AMR][1000 genomes]
rs7748561	0.87[AMR][1000 genomes]
rs7749006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
2	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:144656000-144670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:144657000-144670800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:144658400-144670400	Weak transcription	Fetal Lung	lung
6	chr6:144660400-144670800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:144661600-144670400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:144661600-144670800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:144661800-144670800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:144663200-144685800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:144663400-144675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:144665400-144696400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:144665800-144670600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:144666000-144670400	Weak transcription	Liver	Liver
15	chr6:144666000-144670800	Weak transcription	Fetal Kidney	kidney
16	chr6:144666000-144671000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:144666200-144670600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:144666400-144670400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:144666400-144670800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:144666800-144670400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:144666800-144671000	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:144667000-144670800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:144667000-144671000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:144667000-144671000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:144667400-144670800	Enhancers	Hela-S3	cervix
26	chr6:144667600-144671400	Enhancers	Right Atrium	heart
27	chr6:144667600-144674800	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:144667800-144670800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:144668000-144670800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:144668200-144671000	Enhancers	Left Ventricle	heart
31	chr6:144668400-144670800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:144668600-144670400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:144668600-144670400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:144668600-144670400	Enhancers	Dnd41	blood
35	chr6:144668600-144670800	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:144668600-144670800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:144668600-144670800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr6:144668600-144670800	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr6:144668600-144671400	Weak transcription	Brain Anterior Caudate	brain
40	chr6:144668800-144670000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr6:144668800-144670400	Weak transcription	Primary T cells from cord blood	blood
42	chr6:144668800-144670400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:144668800-144670400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:144668800-144670400	Weak transcription	Gastric	stomach
45	chr6:144668800-144670400	Enhancers	HUVEC	blood vessel
46	chr6:144668800-144670400	Weak transcription	NH-A	brain
47	chr6:144668800-144670400	Weak transcription	Osteobl	bone
48	chr6:144668800-144670600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:144668800-144670600	Weak transcription	HSMM	muscle
50	chr6:144668800-144670800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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