Variant report

Variant	rs73591122
Chromosome Location	chr6:144656237-144656238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12663380	0.90[AFR][1000 genomes]
rs56655780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765330	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144636800-144656400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:144639600-144660200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:144642200-144659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:144643600-144656400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:144643800-144663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:144648200-144661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
8	chr6:144649400-144660000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:144651400-144656600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:144651600-144659800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:144652000-144657000	Weak transcription	Small Intestine	intestine
12	chr6:144652000-144657200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:144652000-144661000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:144652000-144668200	Weak transcription	Aorta	Aorta
15	chr6:144653000-144661200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:144653200-144656600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:144653200-144657200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:144653400-144656400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:144653400-144656600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:144653400-144657200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:144653400-144658000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:144653400-144658000	Weak transcription	Ovary	ovary
24	chr6:144653400-144658000	Weak transcription	NHDF-Ad	bronchial
25	chr6:144653400-144660000	Weak transcription	A549	lung
26	chr6:144653400-144661200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:144653400-144662800	Weak transcription	Osteobl	bone
28	chr6:144653400-144665200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:144653600-144656400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:144653600-144658000	Weak transcription	Fetal Lung	lung
31	chr6:144653600-144661400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:144653600-144662000	Weak transcription	NHLF	lung
33	chr6:144653600-144665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:144654800-144658400	Enhancers	HSMMtube	muscle
35	chr6:144654800-144658800	Genic enhancers	HepG2	liver
36	chr6:144655000-144656800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:144655200-144656400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr6:144655200-144656600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:144655200-144656600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:144655200-144656600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr6:144655200-144657000	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:144655200-144657200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr6:144655200-144657200	Enhancers	Fetal Muscle Leg	muscle
44	chr6:144655200-144657600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:144655200-144657600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:144655200-144657600	Enhancers	NHEK	skin
47	chr6:144655200-144658000	Enhancers	Gastric	stomach
48	chr6:144655200-144658400	Enhancers	Left Ventricle	heart
49	chr6:144655400-144657400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:144655400-144657400	Enhancers	Right Atrium	heart

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