Variant report

Variant	rs7755110
Chromosome Location	chr6:144661872-144661873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr6:144661337-144662477	HepG2	liver:	n/a	chr6:144662243-144662257
2	TEAD4	chr6:144661531-144662308	HepG2	liver:	n/a	n/a
3	FOXA1	chr6:144661552-144662508	HepG2	liver:	n/a	n/a
4	CEBPB	chr6:144661703-144662377	HepG2	liver:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
5	CEBPB	chr6:144661733-144662124	HepG2	liver:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
6	FOS	chr6:144661783-144662589	MCF10A-Er-Src	breast:	n/a	chr6:144662346-144662358 chr6:144662348-144662357 chr6:144662346-144662357 chr6:144662348-144662356 chr6:144662349-144662356 chr6:144662347-144662356
7	ZBTB7A	chr6:144661793-144662134	HepG2	liver:	n/a	n/a
8	NFIC	chr6:144661381-144662568	HepG2	liver:	n/a	n/a
9	FOXA2	chr6:144661363-144663185	HepG2	liver:	n/a	n/a
10	CEBPB	chr6:144661650-144662054	HepG2	liver:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
11	FOXA1	chr6:144661682-144662350	HepG2	liver:	n/a	n/a
12	FOS	chr6:144661772-144662581	MCF10A-Er-Src	breast:	n/a	chr6:144662346-144662358 chr6:144662348-144662357 chr6:144662346-144662357 chr6:144662348-144662356 chr6:144662349-144662356 chr6:144662347-144662356
13	JUN	chr6:144661829-144662495	HepG2	liver:	n/a	chr6:144662346-144662358 chr6:144662348-144662357 chr6:144662348-144662356 chr6:144662349-144662356 chr6:144662347-144662356
14	EP300	chr6:144661629-144662339	HepG2	liver:	n/a	n/a
15	CEBPB	chr6:144661677-144662624	A549	lung:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
16	MYBL2	chr6:144661549-144662325	HepG2	liver:	n/a	chr6:144662243-144662257
17	ZBTB7A	chr6:144661778-144662083	HepG2	liver:	n/a	n/a
18	HDAC2	chr6:144661453-144662324	HepG2	liver:	n/a	chr6:144662268-144662287 chr6:144661709-144661723 chr6:144661712-144661726 chr6:144661713-144661727 chr6:144661708-144661722
19	FOXA1	chr6:144661648-144662528	HepG2	liver:	n/a	n/a
20	CEBPB	chr6:144661770-144662494	IMR90	lung:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
21	CEBPB	chr6:144661733-144662101	HepG2	liver:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
22	SP1	chr6:144661683-144662242	HepG2	liver:	n/a	n/a
23	CEBPB	chr6:144661690-144662552	Hela-S3	cervix:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
24	JUND	chr6:144661653-144662655	SK-N-SH	brain:	n/a	chr6:144662346-144662358 chr6:144662348-144662357 chr6:144662346-144662357 chr6:144662348-144662356 chr6:144662349-144662356 chr6:144662347-144662356
25	CEBPD	chr6:144661736-144662047	HepG2	liver:	n/a	chr6:144661875-144661886 chr6:144661952-144661963
26	MBD4	chr6:144661660-144662370	HepG2	liver:	n/a	n/a
27	CEBPB	chr6:144661708-144662486	A549	lung:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
28	MYC	chr6:144661812-144662491	MCF10A-Er-Src	breast:	n/a	chr6:144662347-144662356
29	JUND	chr6:144661843-144662512	HepG2	liver:	n/a	chr6:144662346-144662358 chr6:144662348-144662357 chr6:144662346-144662357 chr6:144662348-144662356 chr6:144662349-144662356 chr6:144662347-144662356
30	TCF7L2	chr6:144661661-144662531	HepG2	liver:	n/a	chr6:144662347-144662356
31	CEBPB	chr6:144661799-144662084	K562	blood:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
32	SMC3	chr6:144661824-144662163	HepG2	liver:	n/a	n/a
33	CEBPB	chr6:144661777-144662112	H1-hESC	embryonic stem cell:	n/a	chr6:144661953-144661962 chr6:144661951-144661962
34	FOXA1	chr6:144661607-144662300	HepG2	liver:	n/a	n/a
35	FOXA2	chr6:144661699-144662358	HepG2	liver:	n/a	n/a
36	ARID3A	chr6:144661481-144662536	HepG2	liver:	n/a	n/a
37	EP300	chr6:144661561-144662406	HepG2	liver:	n/a	chr6:144662347-144662356 chr6:144662348-144662357
38	NFIC	chr6:144661637-144662265	HepG2	liver:	n/a	n/a
39	HNF4A	chr6:144661743-144662102	HepG2	liver:	n/a	chr6:144662067-144662082
40	HDAC2	chr6:144661610-144662243	HepG2	liver:	n/a	chr6:144661709-144661723 chr6:144661712-144661726 chr6:144661713-144661727 chr6:144661708-144661722

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144656543..144658129-chr6:144660023..144661876,2	K562	blood:
2	chr6:144658220..144661109-chr6:144661857..144663367,2	K562	blood:

Variant related genes	Relation type
UTRN	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12663380	0.83[AFR][1000 genomes]
rs56655780	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755848	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765330	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772325	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144643800-144663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
3	chr6:144652000-144668200	Weak transcription	Aorta	Aorta
4	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:144653400-144662800	Weak transcription	Osteobl	bone
6	chr6:144653400-144665200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:144653600-144662000	Weak transcription	NHLF	lung
8	chr6:144653600-144665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:144655400-144662000	Weak transcription	HUVEC	blood vessel
10	chr6:144656000-144664200	Weak transcription	Fetal Kidney	kidney
11	chr6:144656000-144665200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:144656000-144665200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:144656000-144668400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:144656000-144670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:144656600-144664800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:144657000-144662000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:144657000-144670800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:144657200-144664000	Enhancers	Primary B cells from cord blood	blood
19	chr6:144657200-144664800	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:144657200-144665200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:144657400-144662600	Weak transcription	HSMM	muscle
22	chr6:144657400-144665000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:144657600-144662800	Weak transcription	Brain Substantia Nigra	brain
24	chr6:144657800-144666400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:144658200-144662600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:144658200-144664400	Weak transcription	Fetal Intestine Large	intestine
27	chr6:144658200-144668200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:144658400-144662000	Weak transcription	Dnd41	blood
29	chr6:144658400-144662800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr6:144658400-144664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:144658400-144664400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:144658400-144670400	Weak transcription	Fetal Lung	lung
33	chr6:144658600-144662600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:144658600-144662800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:144658600-144664000	Weak transcription	Fetal Intestine Small	intestine
36	chr6:144658600-144664000	Weak transcription	Fetal Thymus	thymus
37	chr6:144659000-144663000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr6:144659200-144662600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:144659200-144664800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:144659600-144665200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr6:144659800-144662200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr6:144659800-144662800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:144659800-144664800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:144660000-144662000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr6:144660000-144663000	Weak transcription	Psoas Muscle	Psoas
46	chr6:144660000-144663600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:144660000-144665400	Enhancers	Primary hematopoietic stem cells	blood
48	chr6:144660000-144667800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:144660200-144662400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:144660200-144664600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links