Variant report

Variant	rs7772325
Chromosome Location	chr6:144658181-144658182
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:144658146-144658465	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144651729..144654747-chr6:144656256..144659237,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225311	TF binding region
ENSG00000225311	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12663380	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs56655780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591121	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73591122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755848	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7765330	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9689428	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144639600-144660200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:144642200-144659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:144643800-144663000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:144648200-144661200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:144648800-144672800	Weak transcription	Fetal Stomach	stomach
6	chr6:144649400-144660000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:144651600-144659800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:144652000-144661000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:144652000-144668200	Weak transcription	Aorta	Aorta
10	chr6:144653000-144661200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:144653200-144684600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:144653400-144660000	Weak transcription	A549	lung
13	chr6:144653400-144661200	Weak transcription	Brain Anterior Caudate	brain
14	chr6:144653400-144662800	Weak transcription	Osteobl	bone
15	chr6:144653400-144665200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:144653600-144661400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:144653600-144662000	Weak transcription	NHLF	lung
18	chr6:144653600-144665000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:144654800-144658400	Enhancers	HSMMtube	muscle
20	chr6:144654800-144658800	Genic enhancers	HepG2	liver
21	chr6:144655200-144658400	Enhancers	Left Ventricle	heart
22	chr6:144655400-144662000	Weak transcription	HUVEC	blood vessel
23	chr6:144655600-144658200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:144655600-144658200	Enhancers	Placenta	Placenta
25	chr6:144655600-144658400	Enhancers	Esophagus	oesophagus
26	chr6:144655600-144658400	Enhancers	Lung	lung
27	chr6:144655600-144658400	Enhancers	Pancreas	Pancrea
28	chr6:144655600-144658400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr6:144655600-144658600	Enhancers	Stomach Mucosa	stomach
30	chr6:144655800-144658400	Enhancers	Right Ventricle	heart
31	chr6:144655800-144658600	Enhancers	Spleen	Spleen
32	chr6:144655800-144661200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:144656000-144658200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:144656000-144658200	Enhancers	Psoas Muscle	Psoas
35	chr6:144656000-144658400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:144656000-144658400	Enhancers	Adipose Nuclei	Adipose
37	chr6:144656000-144658400	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:144656000-144658600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:144656000-144658600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr6:144656000-144658600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr6:144656000-144660000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:144656000-144661400	Weak transcription	Brain Germinal Matrix	brain
43	chr6:144656000-144664200	Weak transcription	Fetal Kidney	kidney
44	chr6:144656000-144665200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:144656000-144665200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr6:144656000-144668400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:144656000-144670600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr6:144656200-144658400	Enhancers	Fetal Heart	heart
49	chr6:144656200-144658400	Genic enhancers	Fetal Intestine Small	intestine
50	chr6:144656200-144658400	Enhancers	Thymus	Thymus

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