Variant report

Variant	rs73594526
Chromosome Location	chr10:22306706-22306707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34941768	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472118	1.00[AMR][1000 genomes]
rs61697767	1.00[AMR][1000 genomes]
rs73594528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594536	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594537	1.00[AMR][1000 genomes]
rs73594547	1.00[AMR][1000 genomes]
rs73594548	1.00[AMR][1000 genomes]
rs73596574	1.00[AMR][1000 genomes]
rs7922482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22304000-22306800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:22305000-22307200	Enhancers	Fetal Lung	lung
3	chr10:22305800-22306800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:22305800-22306800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:22305800-22306800	Enhancers	Hela-S3	cervix
6	chr10:22305800-22307200	Flanking Active TSS	K562	blood
7	chr10:22306200-22306800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:22306200-22311400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:22306600-22306800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:22306600-22306800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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