Variant report

Variant	rs73594534
Chromosome Location	chr10:22331527-22331528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22331058..22332565-chr10:22338080..22340030,2	MCF-7	breast:
2	chr10:22330805..22332783-chr10:22338698..22341626,2	K562	blood:
3	chr10:22290153..22294328-chr10:22329195..22335039,7	K562	blood:
4	chr10:22326536..22329690-chr10:22331018..22333809,4	K562	blood:

Variant related genes	Relation type
ENSG00000136770	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34941768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57472118	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60497428	0.92[AFR][1000 genomes]
rs61697767	1.00[AMR][1000 genomes]
rs73594526	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594528	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594529	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594536	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594539	0.92[AFR][1000 genomes]
rs73594543	0.86[AFR][1000 genomes]
rs73594547	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73596574	1.00[AMR][1000 genomes]
rs7922482	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22329800-22332600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr10:22330400-22331800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:22330400-22332200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:22331200-22332200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:22331200-22332600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:22331200-22332600	Enhancers	Hela-S3	cervix
7	chr10:22331200-22332800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:22331200-22332800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:22331400-22331600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr10:22331400-22331800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:22331400-22331800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:22331400-22331800	Active TSS	Right Atrium	heart
13	chr10:22331400-22332200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:22331400-22332200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:22331400-22332200	Enhancers	H9 Cell Line	embryonic stem cell
16	chr10:22331400-22332200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:22331400-22332200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:22331400-22332200	Bivalent Enhancer	HepG2	liver
19	chr10:22331400-22332200	Flanking Active TSS	K562	blood
20	chr10:22331400-22332400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:22331400-22332400	Enhancers	Stomach Mucosa	stomach
22	chr10:22331400-22332400	Flanking Active TSS	A549	lung
23	chr10:22331400-22332600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr10:22331400-22332800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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