Variant report

Variant	rs60497428
Chromosome Location	chr10:22334201-22334202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34941768	0.92[AFR][1000 genomes]
rs57472118	0.95[AFR][1000 genomes]
rs59642781	1.00[AMR][1000 genomes]
rs73594511	1.00[AMR][1000 genomes]
rs73594518	1.00[AMR][1000 genomes]
rs73594522	1.00[AMR][1000 genomes]
rs73594523	1.00[AMR][1000 genomes]
rs73594529	0.89[AFR][1000 genomes]
rs73594534	0.92[AFR][1000 genomes]
rs73594536	0.87[AFR][1000 genomes]
rs73594537	0.89[AFR][1000 genomes]
rs73594539	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594543	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594547	0.89[AFR][1000 genomes]
rs73594548	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22332600-22337800	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links