Variant report

Variant	rs73594539
Chromosome Location	chr10:22348742-22348743
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs34941768	0.92[AFR][1000 genomes]
rs57472118	0.94[AFR][1000 genomes]
rs59642781	1.00[AMR][1000 genomes]
rs60497428	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594518	1.00[AMR][1000 genomes]
rs73594522	1.00[AMR][1000 genomes]
rs73594523	1.00[AMR][1000 genomes]
rs73594529	0.89[AFR][1000 genomes]
rs73594534	0.92[AFR][1000 genomes]
rs73594536	0.97[AFR][1000 genomes]
rs73594537	1.00[AFR][1000 genomes]
rs73594543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73594547	1.00[AFR][1000 genomes]
rs73594548	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22344400-22349600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:22347600-22349600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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