Variant report
| Variant | rs73594547 |
|---|---|
| Chromosome Location | chr10:22389377-22389378 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22387963..22390639-chr10:22608316..22610932,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168283 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs34941768 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57472118 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60497428 | 0.89[AFR][1000 genomes] |
| rs61697767 | 1.00[AMR][1000 genomes] |
| rs73594526 | 1.00[AMR][1000 genomes] |
| rs73594528 | 1.00[AMR][1000 genomes] |
| rs73594529 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73594534 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73594536 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73594537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73594539 | 1.00[AFR][1000 genomes] |
| rs73594543 | 0.94[AFR][1000 genomes] |
| rs73594548 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73596574 | 1.00[AMR][1000 genomes] |
| rs7922482 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv971872 | chr10:22386395-22398112 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
