Variant report

Variant	rs73601431
Chromosome Location	chr8:36427949-36427950
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10503990	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10503991	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955002	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11985207	0.87[EUR][1000 genomes]
rs11991128	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11995775	0.83[EUR][1000 genomes]
rs12675630	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885196	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885201	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885203	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885223	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56804036	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6468367	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6468368	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6468370	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6994820	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7005989	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7010462	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73599493	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73599494	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73599496	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73601422	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73601428	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73601434	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs763878	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7815569	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816204	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821548	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7822796	0.85[EUR][1000 genomes]
rs7830903	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7835510	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7845504	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9642714	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9642760	0.83[EUR][1000 genomes]
rs9642761	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034989	chr8:36242017-36436244	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1026897	chr8:36252557-36435042	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1021042	chr8:36255132-36436244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015637	chr8:36307431-36439165	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1034824	chr8:36398752-36530138	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv6155	chr8:36407646-36452741	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023001	chr8:36417309-36482111	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1016306	chr8:36423652-36480301	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36425600-36428200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:36425600-36429600	Enhancers	Brain Germinal Matrix	brain
3	chr8:36425600-36429800	Enhancers	Fetal Muscle Leg	muscle
4	chr8:36426000-36428000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:36426000-36428200	Enhancers	Fetal Kidney	kidney
6	chr8:36426000-36429400	Enhancers	Fetal Brain Male	brain
7	chr8:36426200-36428200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:36426200-36428200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:36426200-36428200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:36426400-36428200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:36426400-36428200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:36426400-36428200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:36426400-36428400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:36426400-36429600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:36426400-36431200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:36426600-36428800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:36426800-36428200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:36427000-36428000	Weak transcription	Fetal Brain Female	brain
19	chr8:36427000-36428200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:36427000-36429800	Enhancers	Adipose Nuclei	Adipose
21	chr8:36427000-36430600	Weak transcription	HMEC	breast
22	chr8:36427000-36430800	Weak transcription	NHEK	skin
23	chr8:36427400-36428400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:36427800-36428800	Enhancers	Fetal Heart	heart

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