Variant report

Variant	rs73601434
Chromosome Location	chr8:36429980-36429981
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10503990	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10503991	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10955002	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11985207	0.87[EUR][1000 genomes]
rs11991128	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995775	0.83[EUR][1000 genomes]
rs12675630	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885196	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885201	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885203	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16885223	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56804036	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59625671	0.84[AMR][1000 genomes]
rs6468367	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6468368	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6468370	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6994820	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7005989	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7010462	0.88[EUR][1000 genomes]
rs73599493	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73599494	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73599496	0.85[EUR][1000 genomes]
rs73601422	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73601428	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73601431	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs763878	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7815569	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816901	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817537	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7821548	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7822796	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7830903	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7835510	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7845504	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9642714	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9642760	0.83[EUR][1000 genomes]
rs9642761	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034989	chr8:36242017-36436244	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1026897	chr8:36252557-36435042	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1021042	chr8:36255132-36436244	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1015637	chr8:36307431-36439165	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1034824	chr8:36398752-36530138	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv6155	chr8:36407646-36452741	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023001	chr8:36417309-36482111	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1016306	chr8:36423652-36480301	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36426400-36431200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:36427000-36430600	Weak transcription	HMEC	breast
3	chr8:36427000-36430800	Weak transcription	NHEK	skin
4	chr8:36428200-36430600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:36428200-36430800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:36428400-36431200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:36428400-36431400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:36429600-36430600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:36429800-36431200	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links