Variant report

Variant	rs7821548
Chromosome Location	chr8:36441582-36441583
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10503990	0.83[EUR][1000 genomes]
rs10503991	0.86[EUR][1000 genomes]
rs10955002	0.83[EUR][1000 genomes]
rs11985207	0.88[EUR][1000 genomes]
rs11991128	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995775	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12675630	0.83[EUR][1000 genomes]
rs16885196	0.83[EUR][1000 genomes]
rs16885201	0.83[EUR][1000 genomes]
rs16885203	0.83[EUR][1000 genomes]
rs16885223	0.87[EUR][1000 genomes]
rs56804036	0.86[EUR][1000 genomes]
rs6468367	0.83[EUR][1000 genomes]
rs6468368	0.86[EUR][1000 genomes]
rs6468370	0.88[EUR][1000 genomes]
rs6994820	0.83[EUR][1000 genomes]
rs7005989	0.86[EUR][1000 genomes]
rs7010462	0.86[EUR][1000 genomes]
rs73599493	0.83[EUR][1000 genomes]
rs73599494	0.83[EUR][1000 genomes]
rs73599496	0.83[EUR][1000 genomes]
rs73601422	0.88[EUR][1000 genomes]
rs73601428	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73601431	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73601434	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs763878	0.83[EUR][1000 genomes]
rs7815569	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816204	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7816901	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7817537	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7822796	0.83[EUR][1000 genomes]
rs7830903	0.86[EUR][1000 genomes]
rs7835510	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7845504	0.83[EUR][1000 genomes]
rs9642714	0.83[EUR][1000 genomes]
rs9642760	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9642761	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023238	chr8:36252557-36530138	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034824	chr8:36398752-36530138	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv6155	chr8:36407646-36452741	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1023001	chr8:36417309-36482111	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1016306	chr8:36423652-36480301	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv831287	chr8:36430788-36605374	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1027937	chr8:36434982-36572189	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36440000-36442000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:36440200-36442200	Enhancers	Adipose Nuclei	Adipose
3	chr8:36441400-36446000	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links