Variant report

Variant	rs73601561
Chromosome Location	chr6:163674464-163674465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6911968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601576	0.89[AFR][1000 genomes]
rs73601590	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163663000-163675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:163665800-163675000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:163669400-163674800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:163669400-163674800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:163671000-163674800	Weak transcription	HSMMtube	muscle
6	chr6:163671000-163680600	Weak transcription	Left Ventricle	heart
7	chr6:163671200-163674800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:163671200-163675000	Weak transcription	Adipose Nuclei	Adipose
9	chr6:163671200-163680600	Weak transcription	Right Ventricle	heart
10	chr6:163671400-163674800	Weak transcription	HSMM	muscle
11	chr6:163672200-163674800	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:163672200-163678000	Enhancers	Brain Substantia Nigra	brain
13	chr6:163672400-163674800	Enhancers	Brain Hippocampus Middle	brain
14	chr6:163672600-163674600	Enhancers	Brain Anterior Caudate	brain
15	chr6:163672600-163676000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:163672800-163677800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:163672800-163678000	Enhancers	Brain Angular Gyrus	brain
18	chr6:163673000-163675800	Enhancers	Fetal Heart	heart
19	chr6:163673200-163674800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr6:163673400-163674800	Weak transcription	Right Atrium	heart
21	chr6:163673400-163675800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:163673600-163674600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:163673600-163674800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:163673600-163674800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:163673600-163674800	Weak transcription	Brain Germinal Matrix	brain
26	chr6:163673600-163681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:163673800-163675600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:163673800-163675800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:163674000-163675600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links