Variant report

Variant	rs73601573
Chromosome Location	chr6:163682200-163682201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163680651..163683431-chr6:163686172..163688713,2	K562	blood:
2	chr6:163680711..163682973-chr6:163830679..163833543,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-10	chr6:163681777-163684612	refGeneNc_1043_NR_033862

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6911968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601576	0.89[AFR][1000 genomes]
rs73601590	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163680000-163683600	Enhancers	Brain Angular Gyrus	brain
2	chr6:163680000-163686600	Enhancers	Fetal Heart	heart
3	chr6:163680200-163682200	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr6:163680400-163682200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
5	chr6:163680600-163682800	Flanking Active TSS	Brain Germinal Matrix	brain
6	chr6:163680800-163682400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr6:163680800-163682600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr6:163680800-163683600	Enhancers	Fetal Brain Male	brain
9	chr6:163681000-163682200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr6:163681000-163682200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:163681000-163682200	Flanking Active TSS	Fetal Brain Female	brain
12	chr6:163681000-163682200	Enhancers	Fetal Thymus	thymus
13	chr6:163681200-163682200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:163681200-163682200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:163681200-163682200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:163681200-163682200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:163681200-163682200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:163681200-163682200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:163681200-163682200	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr6:163681200-163682200	Active TSS	Aorta	Aorta
21	chr6:163681200-163682200	Active TSS	Fetal Kidney	kidney
22	chr6:163681200-163682600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:163681200-163682600	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr6:163681200-163685400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:163681400-163682200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:163681400-163682200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:163681400-163682200	Flanking Active TSS	Brain Hippocampus Middle	brain
28	chr6:163681400-163682600	Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:163681400-163682600	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr6:163681400-163682600	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:163681400-163684200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:163681400-163684200	Weak transcription	Gastric	stomach
33	chr6:163681400-163685200	Weak transcription	Pancreas	Pancrea
34	chr6:163681800-163682200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
35	chr6:163681800-163682200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:163681800-163682200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:163681800-163682200	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:163681800-163682200	Enhancers	Primary B cells from cord blood	blood
39	chr6:163681800-163682200	Enhancers	Fetal Muscle Leg	muscle
40	chr6:163681800-163682200	Flanking Active TSS	Left Ventricle	heart
41	chr6:163681800-163682200	Flanking Active TSS	Right Atrium	heart
42	chr6:163681800-163682200	Active TSS	Right Ventricle	heart
43	chr6:163681800-163682400	Enhancers	Fetal Stomach	stomach
44	chr6:163681800-163682800	Enhancers	Psoas Muscle	Psoas
45	chr6:163681800-163683000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr6:163681800-163683200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr6:163681800-163683800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:163681800-163685000	Weak transcription	Liver	Liver
49	chr6:163682000-163682200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:163682000-163682200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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