Variant report

rSNPs within LD-proxies of this variant (count:7)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163671000-163680600	Weak transcription	Left Ventricle	heart
2	chr6:163671200-163680600	Weak transcription	Right Ventricle	heart
3	chr6:163672200-163678000	Enhancers	Brain Substantia Nigra	brain
4	chr6:163672800-163677800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:163672800-163678000	Enhancers	Brain Angular Gyrus	brain
6	chr6:163673600-163681000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:163675200-163678400	Enhancers	Brain Anterior Caudate	brain
8	chr6:163675600-163680800	Weak transcription	Adipose Nuclei	Adipose
9	chr6:163675800-163678400	Enhancers	Brain Hippocampus Middle	brain
10	chr6:163675800-163680000	Weak transcription	Fetal Heart	heart
11	chr6:163675800-163680600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:163675800-163680800	Weak transcription	Fetal Brain Male	brain
13	chr6:163675800-163681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:163676000-163679800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:163676000-163680600	Weak transcription	Right Atrium	heart
16	chr6:163676000-163681000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:163676200-163678200	Enhancers	Brain Cingulate Gyrus	brain
18	chr6:163676200-163680000	Weak transcription	Brain Germinal Matrix	brain
19	chr6:163676400-163678200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr6:163676400-163680600	Weak transcription	Fetal Muscle Leg	muscle

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