Variant report

Variant	rs73602547
Chromosome Location	chr10:23708490-23708491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11013427	1.00[EUR][1000 genomes]
rs11013432	1.00[EUR][1000 genomes]
rs11013433	1.00[EUR][1000 genomes]
rs13328822	1.00[EUR][1000 genomes]
rs13328830	1.00[EUR][1000 genomes]
rs16923536	1.00[EUR][1000 genomes]
rs56984761	1.00[EUR][1000 genomes]
rs57142582	1.00[EUR][1000 genomes]
rs7077959	1.00[EUR][1000 genomes]
rs7078402	1.00[EUR][1000 genomes]
rs7085674	1.00[EUR][1000 genomes]
rs7101025	1.00[EUR][1000 genomes]
rs73602541	1.00[EUR][1000 genomes]
rs73602543	1.00[EUR][1000 genomes]
rs73602544	1.00[EUR][1000 genomes]
rs73602571	1.00[EUR][1000 genomes]
rs7921695	1.00[EUR][1000 genomes]
rs9651373	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825305	chr10:23698620-23740919	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3314141	chr10:23700976-23708572	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23701600-23709600	Weak transcription	Hela-S3	cervix
2	chr10:23704400-23709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:23706400-23708600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:23706400-23708600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:23706400-23708800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:23706400-23708800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:23706600-23708600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:23706600-23708600	Weak transcription	NHEK	skin
9	chr10:23706600-23708800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:23706800-23709000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:23707000-23711200	Weak transcription	Placenta	Placenta
12	chr10:23707400-23709800	Enhancers	Fetal Lung	lung
13	chr10:23707800-23708800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr10:23707800-23708800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:23707800-23709200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr10:23708200-23708600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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