Variant report

Variant	rs736065
Chromosome Location	chr6:150439556-150439557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150431155..150433658-chr6:150438075..150440832,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2343533	0.87[ASN][1000 genomes]
rs4869827	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4870300	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57363122	0.96[ASN][1000 genomes]
rs60169056	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61621249	0.82[ASN][1000 genomes]
rs9479683	0.85[ASN][1000 genomes]
rs9791221	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150437200-150440000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150437400-150439800	Weak transcription	Right Atrium	heart
3	chr6:150437800-150439600	Weak transcription	Esophagus	oesophagus
4	chr6:150437800-150440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:150438000-150440200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:150438200-150439800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:150438200-150440200	Weak transcription	Brain Substantia Nigra	brain
8	chr6:150438400-150441000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:150438600-150439800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:150439200-150440400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:150439200-150441000	Enhancers	Fetal Kidney	kidney
12	chr6:150439200-150441200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:150439200-150441200	Enhancers	Fetal Brain Male	brain
14	chr6:150439400-150440200	Enhancers	Fetal Heart	heart
15	chr6:150439400-150440600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:150439400-150440600	Enhancers	Fetal Stomach	stomach
17	chr6:150439400-150441200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:150439400-150441200	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:150439400-150441200	Enhancers	Fetal Brain Female	brain
20	chr6:150439400-150441200	Enhancers	Fetal Lung	lung
21	chr6:150439400-150441600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr6:150439400-150441800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:150439400-150442000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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