Variant report
| Variant | rs2343533 |
|---|---|
| Chromosome Location | chr6:150432402-150432403 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150431155..150433658-chr6:150438075..150440832,2 | K562 | blood: | |
| 2 | chr6:150418965..150420517-chr6:150430533..150432429,2 | K562 | blood: | |
| 3 | chr6:150430115..150432623-chr6:150435184..150437434,2 | K562 | blood: | |
| 4 | chr6:150427042..150429216-chr6:150430762..150432440,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12528907 | 0.92[EUR][1000 genomes] |
| rs1953321 | 0.96[EUR][1000 genomes] |
| rs35063891 | 0.96[EUR][1000 genomes] |
| rs4869827 | 0.87[ASN][1000 genomes] |
| rs4870300 | 0.86[ASN][1000 genomes] |
| rs57363122 | 0.93[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs59567523 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs60091146 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60169056 | 0.86[ASN][1000 genomes] |
| rs61621249 | 0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6915233 | 0.88[EUR][1000 genomes] |
| rs6931545 | 0.96[EUR][1000 genomes] |
| rs6931571 | 0.96[EUR][1000 genomes] |
| rs6932103 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6940563 | 0.96[EUR][1000 genomes] |
| rs73603909 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs736065 | 0.87[ASN][1000 genomes] |
| rs7761921 | 0.96[EUR][1000 genomes] |
| rs7769307 | 0.96[EUR][1000 genomes] |
| rs7769319 | 0.96[EUR][1000 genomes] |
| rs7773817 | 0.96[EUR][1000 genomes] |
| rs7774282 | 0.96[EUR][1000 genomes] |
| rs7774298 | 0.96[EUR][1000 genomes] |
| rs9479640 | 0.96[EUR][1000 genomes] |
| rs9479648 | 0.96[EUR][1000 genomes] |
| rs9479683 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9791221 | 0.97[AMR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886770 | chr6:150395424-150499889 | Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv886771 | chr6:150411442-150437749 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1026690 | chr6:150419115-150485583 | Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150422400-150436800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr6:150432400-150433600 | Bivalent Enhancer | K562 | blood |
