Variant report

Variant	rs73612019
Chromosome Location	chr19:37159335-37159336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr19:37159071-37159446	K562	blood:	n/a	chr19:37159316-37159327 chr19:37159316-37159326 chr19:37159288-37159304 chr19:37159193-37159202 chr19:37159318-37159325 chr19:37159317-37159326

No.	Distal block	Cell Line	Cell type
1	chr19:37129696..37132146-chr19:37158432..37159959,2	K562	blood:
2	chr19:37158057..37159719-chr19:37162849..37165565,2	MCF-7	breast:
3	chr19:37157483..37161085-chr19:37175435..37180024,4	MCF-7	breast:

Variant related genes	Relation type
ZNF461	TF binding region
ENSG00000189042	Chromatin interaction
ENSG00000197808	Chromatin interaction
ENSG00000225975	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73607662	0.83[AFR][1000 genomes]
rs73607668	0.83[AFR][1000 genomes]
rs73607672	0.83[AFR][1000 genomes]
rs73607677	0.83[AFR][1000 genomes]
rs73607678	0.83[AFR][1000 genomes]
rs73607681	0.83[AFR][1000 genomes]
rs826981	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37156600-37159400	Active TSS	HUES64 Cell Line	embryonic stem cell
2	chr19:37156600-37159400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:37156600-37159600	Active TSS	Rectal Smooth Muscle	rectum
4	chr19:37156600-37160200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr19:37156800-37159600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr19:37157000-37159400	Active TSS	HSMMtube	muscle
7	chr19:37157000-37159600	Active TSS	Colonic Mucosa	Colon
8	chr19:37157400-37159400	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr19:37157400-37159800	ZNF genes & repeats	Fetal Brain Male	brain
10	chr19:37158400-37169000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr19:37158600-37159400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr19:37158600-37159400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr19:37158600-37159400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr19:37158600-37159400	Weak transcription	Fetal Lung	lung
15	chr19:37158600-37159400	Enhancers	Fetal Muscle Leg	muscle
16	chr19:37158600-37159600	Enhancers	Primary B cells from cord blood	blood
17	chr19:37158600-37159600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:37158600-37159600	Enhancers	Gastric	stomach
19	chr19:37158600-37159600	Enhancers	Lung	lung
20	chr19:37158600-37159600	Enhancers	Spleen	Spleen
21	chr19:37158600-37159800	Enhancers	Primary B cells from peripheral blood	blood
22	chr19:37158600-37159800	Enhancers	Primary T cells fromperipheralblood	blood
23	chr19:37158600-37159800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr19:37158600-37159800	Enhancers	Thymus	Thymus
25	chr19:37158600-37160000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:37158600-37160200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr19:37158600-37160200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr19:37158600-37162000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr19:37158600-37162800	Weak transcription	Brain Angular Gyrus	brain
30	chr19:37158600-37167400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr19:37158600-37167400	Weak transcription	Psoas Muscle	Psoas
32	chr19:37158600-37168800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:37158600-37168800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr19:37158600-37169000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr19:37158600-37169000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:37158600-37169000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr19:37158600-37172800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr19:37158600-37177200	Weak transcription	Fetal Kidney	kidney
39	chr19:37158600-37177400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr19:37158600-37177400	Weak transcription	NHDF-Ad	bronchial
41	chr19:37158600-37177800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr19:37158800-37159400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr19:37158800-37159400	ZNF genes & repeats	Fetal Intestine Large	intestine
44	chr19:37158800-37159400	Flanking Active TSS	Placenta	Placenta
45	chr19:37158800-37159600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr19:37158800-37159600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
47	chr19:37158800-37159600	Enhancers	Fetal Heart	heart
48	chr19:37158800-37159800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:37158800-37159800	ZNF genes & repeats	Brain Germinal Matrix	brain
50	chr19:37158800-37159800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links