Variant report

Variant	rs73607678
Chromosome Location	chr19:37322938-37322939
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37321003..37323816-chr19:37327418..37329618,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197863	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs57080651	1.00[AMR][1000 genomes]
rs57231148	1.00[AMR][1000 genomes]
rs58378903	1.00[AMR][1000 genomes]
rs58409556	1.00[AMR][1000 genomes]
rs58948692	1.00[AMR][1000 genomes]
rs59055784	1.00[AMR][1000 genomes]
rs59197853	1.00[AMR][1000 genomes]
rs59447056	1.00[AMR][1000 genomes]
rs59677148	1.00[AMR][1000 genomes]
rs60418129	1.00[AMR][1000 genomes]
rs60561021	1.00[AMR][1000 genomes]
rs60765291	1.00[AMR][1000 genomes]
rs61354972	1.00[AMR][1000 genomes]
rs73607647	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73607681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73612019	0.83[AFR][1000 genomes]
rs73614169	1.00[AMR][1000 genomes]
rs73614181	1.00[AMR][1000 genomes]
rs73618496	1.00[AMR][1000 genomes]
rs73620004	1.00[AMR][1000 genomes]
rs73620013	1.00[AMR][1000 genomes]
rs73621705	1.00[AMR][1000 genomes]
rs73621760	1.00[AMR][1000 genomes]
rs73623522	1.00[AMR][1000 genomes]
rs73623524	1.00[AMR][1000 genomes]
rs73623526	1.00[AMR][1000 genomes]
rs73623563	1.00[AMR][1000 genomes]
rs73623564	1.00[AMR][1000 genomes]
rs73623569	1.00[AMR][1000 genomes]
rs73625205	1.00[AMR][1000 genomes]
rs73625207	1.00[AMR][1000 genomes]
rs73626748	1.00[AMR][1000 genomes]
rs73626755	1.00[AMR][1000 genomes]
rs73626758	1.00[AMR][1000 genomes]
rs73626762	1.00[AMR][1000 genomes]
rs73626765	1.00[AMR][1000 genomes]
rs73626768	1.00[AMR][1000 genomes]
rs73628736	1.00[AMR][1000 genomes]
rs73628740	1.00[AMR][1000 genomes]
rs73628744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv3517005	chr19:37193712-37364110	Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	esv3517004	chr19:37193762-37363960	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
10	esv3517006	chr19:37193762-37363960	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv911650	chr19:37241141-37331614	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
18	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
19	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	esv3354270	chr19:37309161-37364929	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37287400-37327400	ZNF genes & repeats	Liver	Liver
2	chr19:37289200-37327000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:37289400-37327600	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:37289600-37327400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:37289600-37327400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:37292000-37328400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
7	chr19:37293400-37325600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr19:37293600-37325000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr19:37295000-37327200	ZNF genes & repeats	Fetal Lung	lung
10	chr19:37295600-37324800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr19:37295600-37327200	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:37298200-37327000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr19:37298400-37328200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr19:37299400-37327000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr19:37300000-37327200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:37300800-37324000	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr19:37303000-37325800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:37303200-37325800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
19	chr19:37303200-37327800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr19:37303200-37327800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr19:37303200-37328000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr19:37303400-37325600	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr19:37303400-37327000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:37303800-37327000	ZNF genes & repeats	Brain Germinal Matrix	brain
25	chr19:37304200-37327400	ZNF genes & repeats	Dnd41	blood
26	chr19:37308400-37327400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:37308600-37323800	ZNF genes & repeats	Left Ventricle	heart
28	chr19:37308600-37327200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr19:37308600-37327600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr19:37308800-37323800	ZNF genes & repeats	Ovary	ovary
31	chr19:37309400-37325800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr19:37309600-37324400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
33	chr19:37309600-37325200	ZNF genes & repeats	Aorta	Aorta
34	chr19:37310000-37325600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
35	chr19:37311000-37328200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr19:37312600-37328000	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr19:37313200-37325000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:37314600-37323600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr19:37315600-37325800	ZNF genes & repeats	Fetal Kidney	kidney
40	chr19:37318000-37325000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
41	chr19:37318000-37327200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
42	chr19:37318200-37324600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
43	chr19:37318200-37324800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
44	chr19:37318200-37325600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
45	chr19:37318200-37325800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr19:37318200-37325800	ZNF genes & repeats	Brain Hippocampus Middle	brain
47	chr19:37318200-37327000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
48	chr19:37318200-37328200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr19:37318400-37325800	ZNF genes & repeats	Primary B cells from cord blood	blood
50	chr19:37318400-37325800	ZNF genes & repeats	Stomach Smooth Muscle	stomach

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