Variant report

Variant	rs73626762
Chromosome Location	chr19:37396946-37396947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs56745069	1.00[AMR][1000 genomes]
rs57080651	1.00[AMR][1000 genomes]
rs57231148	1.00[AMR][1000 genomes]
rs58378903	1.00[AMR][1000 genomes]
rs58409556	1.00[AMR][1000 genomes]
rs58948692	1.00[AMR][1000 genomes]
rs59043209	1.00[AMR][1000 genomes]
rs59055784	1.00[AMR][1000 genomes]
rs59197853	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59447056	1.00[AMR][1000 genomes]
rs59677148	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60096362	1.00[AMR][1000 genomes]
rs60418129	1.00[AMR][1000 genomes]
rs60561021	1.00[AMR][1000 genomes]
rs60765291	1.00[AMR][1000 genomes]
rs61166122	1.00[AMR][1000 genomes]
rs61354972	1.00[AMR][1000 genomes]
rs73607647	1.00[AMR][1000 genomes]
rs73607662	1.00[AMR][1000 genomes]
rs73607668	1.00[AMR][1000 genomes]
rs73607672	1.00[AMR][1000 genomes]
rs73607677	1.00[AMR][1000 genomes]
rs73607678	1.00[AMR][1000 genomes]
rs73607681	1.00[AMR][1000 genomes]
rs73614169	1.00[AMR][1000 genomes]
rs73614181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618496	1.00[AMR][1000 genomes]
rs73620004	1.00[AMR][1000 genomes]
rs73620013	1.00[AMR][1000 genomes]
rs73621705	1.00[AMR][1000 genomes]
rs73621760	1.00[AMR][1000 genomes]
rs73623522	1.00[AMR][1000 genomes]
rs73623524	1.00[AMR][1000 genomes]
rs73623526	1.00[AMR][1000 genomes]
rs73623563	1.00[AMR][1000 genomes]
rs73623564	1.00[AMR][1000 genomes]
rs73623569	1.00[AMR][1000 genomes]
rs73625205	1.00[AMR][1000 genomes]
rs73625207	1.00[AMR][1000 genomes]
rs73625229	1.00[AMR][1000 genomes]
rs73625231	1.00[AMR][1000 genomes]
rs73625236	1.00[AMR][1000 genomes]
rs73625241	1.00[AMR][1000 genomes]
rs73625242	1.00[AMR][1000 genomes]
rs73625243	1.00[AMR][1000 genomes]
rs73625257	1.00[AMR][1000 genomes]
rs73625289	1.00[AMR][1000 genomes]
rs73626561	1.00[AMR][1000 genomes]
rs73626571	1.00[AMR][1000 genomes]
rs73626582	1.00[AMR][1000 genomes]
rs73626748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
19	nsv524754	chr19:37383894-37403224	ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37344400-37406400	ZNF genes & repeats	Liver	Liver
2	chr19:37346400-37404600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37353400-37405000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37373800-37403400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:37374000-37400400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:37374000-37405400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37374200-37404200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr19:37374400-37400400	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:37374400-37406400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:37374600-37400400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:37375000-37397200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr19:37379400-37400400	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr19:37379600-37399600	ZNF genes & repeats	Ovary	ovary
14	chr19:37380000-37399800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr19:37380400-37405000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr19:37385200-37398200	Weak transcription	Fetal Thymus	thymus
17	chr19:37388200-37399400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr19:37388800-37399600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
19	chr19:37389000-37399600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr19:37390000-37399400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
21	chr19:37391000-37397000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
22	chr19:37391600-37400000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr19:37391600-37400400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
24	chr19:37391600-37400400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
25	chr19:37391600-37403200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
26	chr19:37391800-37399600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr19:37391800-37400000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:37391800-37400200	Strong transcription	Osteobl	bone
29	chr19:37392200-37398200	Weak transcription	NH-A	brain
30	chr19:37392600-37399400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
31	chr19:37392600-37400200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:37392800-37397200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:37392800-37398600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr19:37392800-37399000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr19:37393000-37397200	Weak transcription	Brain Angular Gyrus	brain
36	chr19:37393000-37397600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr19:37393000-37400200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr19:37393000-37406200	Weak transcription	HUVEC	blood vessel
39	chr19:37393200-37398600	Weak transcription	HSMMtube	muscle
40	chr19:37393400-37398600	Weak transcription	Right Ventricle	heart
41	chr19:37393400-37398800	Weak transcription	Pancreas	Pancrea
42	chr19:37393400-37406000	Weak transcription	NHLF	lung
43	chr19:37394000-37397200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:37394000-37398800	Weak transcription	Esophagus	oesophagus
45	chr19:37394000-37399600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr19:37394200-37398600	ZNF genes & repeats	Fetal Kidney	kidney
47	chr19:37394200-37399400	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr19:37394200-37400200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
49	chr19:37394200-37402400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr19:37394400-37399600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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