Variant report

Variant	rs73628744
Chromosome Location	chr19:37403956-37403957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:37403956-37404006	A549	lung:	n/a
2	chr19:37403956-37404006	AG10803	skin:	n/a
3	chr19:37403956-37404006	CMK	blood:	n/a
4	chr19:37403956-37404006	SK-N-MC	brain:	n/a
5	chr19:37403956-37404006	HRPEpiC	eye:	n/a
6	chr19:37403956-37404006	ECC-1	luminal epithelium:	n/a
7	chr19:37403956-37404006	HIPEpiC	eye:	n/a
8	chr19:37403956-37404006	Hela-S3	cervix:	n/a
9	chr19:37403956-37404006	HL-60	blood:	n/a
10	chr19:37403956-37404006	HEK293	kidney:	embryo
11	chr19:37403956-37404006	SAEC	small airway:	n/a
12	chr19:37403956-37404006	Caco-2	colon:	n/a
13	chr19:37403956-37404006	GM12891	blood:	n/a
14	chr19:37403956-37404006	IMR90	lung:	fetal
15	chr19:37403956-37404006	SK-N-SH_RA	brain:	n/a
16	chr19:37403956-37404006	ovcar-3	ovarian:	n/a
17	chr19:37403956-37404006	HRCEpiC	kidney:	n/a
18	chr19:37403956-37404006	PrEC	prostate:	n/a
19	chr19:37403956-37404006	NHBE	bronchial:	n/a
20	chr19:37403956-37404006	MCF-7	breast:	n/a
21	chr19:37403956-37404006	RPTEC	kidney:	n/a
22	chr19:37403956-37404006	Jurkat	blood:	n/a
23	chr19:37403956-37404006	HepG2	liver:	n/a
24	chr19:37403956-37404006	U87	brain:	n/a
25	chr19:37403956-37404006	PANC-1	pancreas:	n/a
26	chr19:37403956-37404006	HNPCEpiC	eye:	n/a
27	chr19:37403956-37404006	AG09309	skin:	n/a
28	chr19:37403956-37404006	HCPEpiC	choroid plexus:	n/a
29	chr19:37403956-37404006	MCF10A-Er-Src	breast:	n/a
30	chr19:37403956-37404006	BE2_C	brain:	n/a
31	chr19:37403956-37404006	HCT-116	colon:	n/a
32	chr19:37403956-37404006	AG04449	skin:	fetal
33	chr19:37403956-37404006	AG09319	gingival:	n/a
34	chr19:37403956-37404006	HCF	heart:	n/a
35	chr19:37403956-37404006	NHDF-neo	bronchial:	n/a
36	chr19:37403956-37404006	BJ	skin:	n/a
37	chr19:37403956-37404006	GM12892	blood:	n/a
38	chr19:37403956-37404006	T-47D	breast:	n/a
39	chr19:37403956-37404006	HPAEpiC	pulmonary alveolar:	n/a
40	chr19:37403956-37404006	HAEpiC	amniotic membrane:	n/a
41	chr19:37403956-37404006	HRE	kidney:	n/a
42	chr19:37403956-37404006	SK-N-SH	brain:	n/a
43	chr19:37403956-37404006	GM06990	blood:	n/a
44	chr19:37403956-37404006	NT2-D1	testis:	n/a
45	chr19:37403956-37404006	SKMC	muscle:	n/a
46	chr19:37403956-37404006	ProgFib	skin:	n/a
47	chr19:37403956-37404006	HMEC	breast:	n/a
48	chr19:37403956-37404006	NH-A	brain:	n/a
49	chr19:37403956-37404006	LNCaP	prostate:	n/a
50	chr19:37403956-37404006	Hepatocyte	liver:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37402448..37404618-chr19:37405463..37407897,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF568	CpG island
ENSG00000198453	Chromatin interaction
ENSG00000185869	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs56745069	1.00[AMR][1000 genomes]
rs57080651	1.00[AMR][1000 genomes]
rs57231148	1.00[AMR][1000 genomes]
rs58378903	1.00[AMR][1000 genomes]
rs58409556	1.00[AMR][1000 genomes]
rs58948692	1.00[AMR][1000 genomes]
rs59043209	1.00[AMR][1000 genomes]
rs59055784	1.00[AMR][1000 genomes]
rs59197853	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59447056	1.00[AMR][1000 genomes]
rs59677148	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60096362	1.00[AMR][1000 genomes]
rs60418129	1.00[AMR][1000 genomes]
rs60561021	1.00[AMR][1000 genomes]
rs60765291	1.00[AMR][1000 genomes]
rs61166122	1.00[AMR][1000 genomes]
rs61354972	1.00[AMR][1000 genomes]
rs73607647	1.00[AMR][1000 genomes]
rs73607662	1.00[AMR][1000 genomes]
rs73607668	1.00[AMR][1000 genomes]
rs73607672	1.00[AMR][1000 genomes]
rs73607677	1.00[AMR][1000 genomes]
rs73607678	1.00[AMR][1000 genomes]
rs73607681	1.00[AMR][1000 genomes]
rs73614169	1.00[AMR][1000 genomes]
rs73614181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618496	1.00[AMR][1000 genomes]
rs73620004	1.00[AMR][1000 genomes]
rs73620013	1.00[AMR][1000 genomes]
rs73620851	1.00[AMR][1000 genomes]
rs73621705	1.00[AMR][1000 genomes]
rs73621760	1.00[AMR][1000 genomes]
rs73623522	1.00[AMR][1000 genomes]
rs73623524	1.00[AMR][1000 genomes]
rs73623526	1.00[AMR][1000 genomes]
rs73623563	1.00[AMR][1000 genomes]
rs73623564	1.00[AMR][1000 genomes]
rs73623569	1.00[AMR][1000 genomes]
rs73625205	1.00[AMR][1000 genomes]
rs73625207	1.00[AMR][1000 genomes]
rs73625229	1.00[AMR][1000 genomes]
rs73625231	1.00[AMR][1000 genomes]
rs73625236	1.00[AMR][1000 genomes]
rs73625241	1.00[AMR][1000 genomes]
rs73625242	1.00[AMR][1000 genomes]
rs73625243	1.00[AMR][1000 genomes]
rs73625257	1.00[AMR][1000 genomes]
rs73625289	1.00[AMR][1000 genomes]
rs73626561	1.00[AMR][1000 genomes]
rs73626571	1.00[AMR][1000 genomes]
rs73626582	1.00[AMR][1000 genomes]
rs73626748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73626768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73628740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv1060155	chr19:37274915-37458788	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv544000	chr19:37274915-37458788	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
12	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv911651	chr19:37300554-37428465	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
15	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
16	nsv458569	chr19:37331614-37412887	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv579462	chr19:37331614-37412887	Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37344400-37406400	ZNF genes & repeats	Liver	Liver
2	chr19:37346400-37404600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37353400-37405000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37374000-37405400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:37374200-37404200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:37374400-37406400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:37380400-37405000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:37393000-37406200	Weak transcription	HUVEC	blood vessel
9	chr19:37393400-37406000	Weak transcription	NHLF	lung
10	chr19:37394400-37404200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr19:37395200-37406800	Weak transcription	Stomach Mucosa	stomach
12	chr19:37395400-37406000	Weak transcription	NHEK	skin
13	chr19:37397200-37404600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:37397600-37406000	Weak transcription	Fetal Heart	heart
15	chr19:37398200-37405000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr19:37399200-37406000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:37399200-37406000	Weak transcription	NH-A	brain
18	chr19:37399400-37406000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr19:37399400-37406000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr19:37399400-37406000	Weak transcription	Esophagus	oesophagus
21	chr19:37399400-37406000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr19:37399400-37406200	Weak transcription	Colonic Mucosa	Colon
23	chr19:37399400-37406200	Weak transcription	Fetal Thymus	thymus
24	chr19:37399400-37406200	Weak transcription	Gastric	stomach
25	chr19:37399400-37406200	Weak transcription	Psoas Muscle	Psoas
26	chr19:37399600-37405800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr19:37399600-37406000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:37399600-37406000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:37399600-37406000	Weak transcription	Fetal Brain Male	brain
30	chr19:37399600-37406000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr19:37399600-37406200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr19:37399600-37406200	Weak transcription	Brain Angular Gyrus	brain
33	chr19:37400200-37406200	Weak transcription	Osteobl	bone
34	chr19:37400400-37406000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr19:37400400-37406000	Weak transcription	Fetal Kidney	kidney
36	chr19:37400400-37406200	Weak transcription	Colon Smooth Muscle	Colon
37	chr19:37400400-37406200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr19:37400400-37406200	Weak transcription	Fetal Muscle Leg	muscle
39	chr19:37400400-37406800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:37401000-37405200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr19:37401200-37404200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr19:37401400-37404400	Strong transcription	Dnd41	blood
43	chr19:37401400-37404400	Strong transcription	NHDF-Ad	bronchial
44	chr19:37401400-37406400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr19:37401600-37404200	Strong transcription	Brain Germinal Matrix	brain
46	chr19:37401800-37404800	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr19:37401800-37405800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr19:37402000-37404400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
49	chr19:37402000-37406000	Weak transcription	Left Ventricle	heart
50	chr19:37402400-37404400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links