Variant report

Variant	rs73612437
Chromosome Location	chr6:150205310-150205311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56865115	1.00[AFR][1000 genomes]
rs57292884	1.00[AFR][1000 genomes]
rs61252315	1.00[AFR][1000 genomes]
rs73608693	0.81[AFR][1000 genomes]
rs73612427	0.91[AFR][1000 genomes]
rs73612497	0.81[AFR][1000 genomes]
rs73612499	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150202600-150205400	Weak transcription	Ovary	ovary
2	chr6:150202800-150208600	Weak transcription	HSMMtube	muscle
3	chr6:150204200-150206800	Weak transcription	Hela-S3	cervix
4	chr6:150205000-150205400	Enhancers	Duodenum Mucosa	Duodenum
5	chr6:150205000-150205800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:150205000-150205800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:150205000-150205800	Enhancers	Fetal Lung	lung
8	chr6:150205000-150206000	Enhancers	NHLF	lung
9	chr6:150205000-150210400	Enhancers	HMEC	breast
10	chr6:150205200-150205400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:150205200-150205400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:150205200-150205400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:150205200-150205400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:150205200-150205400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:150205200-150205400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:150205200-150205400	Enhancers	Esophagus	oesophagus
17	chr6:150205200-150205400	Active TSS	Right Atrium	heart
18	chr6:150205200-150205400	Flanking Active TSS	NHEK	skin
19	chr6:150205200-150205600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr6:150205200-150205600	Enhancers	Placenta	Placenta
21	chr6:150205200-150205600	Enhancers	NHDF-Ad	bronchial
22	chr6:150205200-150205800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:150205200-150205800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:150205200-150205800	Enhancers	Stomach Smooth Muscle	stomach
25	chr6:150205200-150205800	Bivalent Enhancer	K562	blood
26	chr6:150205200-150206000	Enhancers	Adipose Nuclei	Adipose

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