Variant report

Variant	rs73612499
Chromosome Location	chr6:150246881-150246882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:150246682-150247048	HepG2	liver:	n/a	n/a
2	HCFC1	chr6:150246855-150246883	K562	blood:	n/a	n/a
3	SUZ12	chr6:150246418-150247513	H1-hESC	embryonic stem cell:	n/a	n/a
4	ELF1	chr6:150246673-150247077	MCF-7	breast:	n/a	n/a
5	MAZ	chr6:150246587-150248252	IMR90	lung:	n/a	n/a
6	E2F6	chr6:150246798-150247053	K562	blood:	n/a	chr6:150246945-150246955
7	ELF1	chr6:150246692-150247008	GM12878	blood:	n/a	n/a
8	ELF1	chr6:150246666-150247083	MCF-7	breast:	n/a	n/a
9	ELF1	chr6:150246737-150247055	HepG2	liver:	n/a	n/a
10	ELF1	chr6:150246631-150247067	K562	blood:	n/a	n/a
11	HMGN3	chr6:150246722-150247087	K562	blood:	n/a	n/a
12	ELF1	chr6:150246714-150247017	HepG2	liver:	n/a	n/a
13	ELF1	chr6:150246630-150247059	K562	blood:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150155818..150157641-chr6:150245238..150247988,3	MCF-7	breast:
2	chr6:150239646..150241708-chr6:150246246..150248253,2	K562	blood:
3	chr6:150181490..150187274-chr6:150243970..150248410,8	MCF-7	breast:
4	chr6:150044112..150046636-chr6:150245149..150247881,2	MCF-7	breast:
5	chr6:150155297..150157506-chr6:150246299..150249094,2	K562	blood:
6	chr6:150243800..150245856-chr6:150245979..150247636,2	MCF-7	breast:
7	chr6:150154902..150156132-chr6:150246873..150248035,8	MCF-7	breast:
8	chr6:150246157..150249113-chr6:150336737..150339289,2	K562	blood:
9	chr6:150153805..150156797-chr6:150246692..150249094,2	K562	blood:

No data

Variant related genes	Relation type
RAET1G	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000203722	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56865115	0.81[AFR][1000 genomes]
rs57292884	0.81[AFR][1000 genomes]
rs57516889	0.81[AFR][1000 genomes]
rs61252315	0.81[AFR][1000 genomes]
rs73612437	0.81[AFR][1000 genomes]
rs73612497	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150242800-150247800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150244800-150247000	Weak transcription	A549	lung
3	chr6:150244800-150247000	Weak transcription	Hela-S3	cervix
4	chr6:150246200-150247000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:150246200-150247000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr6:150246200-150247000	Flanking Bivalent TSS/Enh	HepG2	liver
7	chr6:150246400-150247000	Flanking Active TSS	NHDF-Ad	bronchial
8	chr6:150246400-150247200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr6:150246400-150247200	Flanking Active TSS	NHEK	skin
10	chr6:150246400-150247400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:150246400-150247600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:150246400-150247600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:150246400-150247600	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr6:150246400-150247600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:150246400-150247600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
16	chr6:150246400-150247600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
17	chr6:150246400-150247800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:150246600-150247000	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:150246600-150247000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:150246600-150247000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr6:150246600-150247000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr6:150246600-150247000	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr6:150246600-150247000	Flanking Active TSS	Esophagus	oesophagus
24	chr6:150246600-150247000	Bivalent Enhancer	Fetal Thymus	thymus
25	chr6:150246600-150247000	Flanking Active TSS	K562	blood
26	chr6:150246600-150247200	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:150246600-150247200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
28	chr6:150246600-150247200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:150246600-150247200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
30	chr6:150246600-150247200	Flanking Active TSS	Pancreas	Pancrea
31	chr6:150246600-150247200	Flanking Active TSS	HUVEC	blood vessel
32	chr6:150246600-150247200	Flanking Active TSS	NH-A	brain
33	chr6:150246600-150247200	Flanking Active TSS	Osteobl	bone
34	chr6:150246600-150247400	Active TSS	Right Atrium	heart
35	chr6:150246600-150247400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr6:150246600-150247600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr6:150246600-150247600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
38	chr6:150246600-150247600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:150246600-150247600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:150246600-150247600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
41	chr6:150246600-150247600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
42	chr6:150246600-150247600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
45	chr6:150246600-150247600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
46	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr6:150246600-150247600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:150246600-150247600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:150246600-150247600	Active TSS	Brain Angular Gyrus	brain
50	chr6:150246600-150247600	Bivalent/Poised TSS	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links