Variant report

Variant	rs56865115
Chromosome Location	chr6:150242695-150242696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000268592	Chromatin interaction
ENSG00000164520	Chromatin interaction
ENSG00000120256	Chromatin interaction
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57292884	1.00[AFR][1000 genomes]
rs61252315	1.00[AFR][1000 genomes]
rs73608693	0.81[AFR][1000 genomes]
rs73612427	0.91[AFR][1000 genomes]
rs73612437	1.00[AFR][1000 genomes]
rs73612497	0.81[AFR][1000 genomes]
rs73612499	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv970172	chr6:150235248-150244455	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150227800-150243400	Weak transcription	Right Ventricle	heart
2	chr6:150230400-150243600	Weak transcription	Pancreas	Pancrea
3	chr6:150237200-150243600	Weak transcription	Right Atrium	heart
4	chr6:150239400-150243200	Weak transcription	HMEC	breast
5	chr6:150239600-150243400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:150239600-150243400	Weak transcription	NHEK	skin
7	chr6:150239800-150243400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150239800-150243400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:150239800-150243600	Weak transcription	Esophagus	oesophagus
10	chr6:150241200-150243800	Weak transcription	Aorta	Aorta
11	chr6:150242400-150243800	Enhancers	Spleen	Spleen
12	chr6:150242600-150243000	Active TSS	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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