Variant report

Variant	rs73626790
Chromosome Location	chr19:56832416-56832417
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:56832185-56834017	PBDE	blood:	n/a	n/a
2	GATA1	chr19:56832003-56834225	PBDE	blood:	n/a	chr19:56832167-56832183 chr19:56833121-56833131
3	GATA1	chr19:56832051-56834247	K562	blood:	n/a	chr19:56832167-56832183 chr19:56833121-56833131

No.	Distal block	Cell Line	Cell type
1	chr19:56825352..56829856-chr19:56831358..56835885,6	K562	blood:
2	chr19:56760039..56762057-chr19:56831322..56833020,2	K562	blood:
3	chr19:56824639..56829612-chr19:56829732..56835885,11	K562	blood:

Variant related genes	Relation type
VN2R17P	TF binding region
ENSG00000200646	TF binding region
ENSG00000131848	Chromatin interaction
ENSG00000213014	Chromatin interaction
ENSG00000267549	Chromatin interaction
ENSG00000200646	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs58997200	1.00[AMR][1000 genomes]
rs60628802	1.00[AMR][1000 genomes]
rs61079647	1.00[AMR][1000 genomes]
rs61389610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7247773	1.00[AMR][1000 genomes]
rs7257563	1.00[AMR][1000 genomes]
rs73618178	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73618195	1.00[AMR][1000 genomes]
rs73618201	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73621209	1.00[AMR][1000 genomes]
rs73628710	1.00[AMR][1000 genomes]
rs73628723	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064371	chr19:56418215-56842450	ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv1057316	chr19:56418215-56849458	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
3	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
4	nsv526325	chr19:56741186-56852035	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
6	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
7	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
8	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
9	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1058026	chr19:56799847-56833153	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv1067261	chr19:56820571-56854916	Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56827200-56832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr19:56827600-56832800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr19:56827600-56832800	Weak transcription	Fetal Kidney	kidney
4	chr19:56827600-56835400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:56827800-56832600	Weak transcription	Fetal Heart	heart
6	chr19:56829000-56837000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr19:56829200-56834200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr19:56829600-56833600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr19:56829800-56834000	Enhancers	Primary hematopoietic stem cells	blood
10	chr19:56829800-56834200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:56830000-56833400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr19:56830400-56832800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr19:56831400-56832800	Weak transcription	Colonic Mucosa	Colon
14	chr19:56831600-56833200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:56832000-56833200	Enhancers	Left Ventricle	heart
16	chr19:56832200-56833000	Enhancers	Duodenum Mucosa	Duodenum
17	chr19:56832200-56833400	Enhancers	Placenta	Placenta
18	chr19:56832200-56833800	Enhancers	Primary B cells from cord blood	blood
19	chr19:56832200-56834000	Enhancers	Right Atrium	heart
20	chr19:56832200-56834200	Flanking Active TSS	K562	blood
21	chr19:56832400-56833000	Enhancers	Lung	lung
22	chr19:56832400-56833000	Enhancers	Right Ventricle	heart
23	chr19:56832400-56833200	Enhancers	Brain Hippocampus Middle	brain

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