Variant report

Variant	rs73647035
Chromosome Location	chr9:71567674-71567675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10120881	1.00[AMR][1000 genomes]
rs12341286	1.00[AMR][1000 genomes]
rs56190398	1.00[AMR][1000 genomes]
rs73646773	1.00[AMR][1000 genomes]
rs73646774	1.00[AMR][1000 genomes]
rs73647029	1.00[AMR][1000 genomes]
rs73647030	1.00[AMR][1000 genomes]
rs73647032	1.00[AMR][1000 genomes]
rs73647036	1.00[AMR][1000 genomes]
rs73647037	1.00[AMR][1000 genomes]
rs73647039	1.00[AMR][1000 genomes]
rs73647042	1.00[AMR][1000 genomes]
rs73647045	0.85[AFR][1000 genomes]
rs73647048	1.00[AMR][1000 genomes]
rs73647049	1.00[AMR][1000 genomes]
rs73647050	1.00[AMR][1000 genomes]
rs73647051	1.00[AMR][1000 genomes]
rs73647052	1.00[AMR][1000 genomes]
rs9314837	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614549	chr9:71506459-71659280	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1051798	chr9:71511805-71792032	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	esv1833433	chr9:71544920-71598165	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71510400-71576200	Weak transcription	Stomach Mucosa	stomach
2	chr9:71519400-71573000	Weak transcription	Gastric	stomach
3	chr9:71535000-71569600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:71549200-71570000	Weak transcription	Fetal Stomach	stomach
5	chr9:71549600-71569600	Weak transcription	Fetal Kidney	kidney
6	chr9:71554400-71569600	Weak transcription	Aorta	Aorta
7	chr9:71557600-71578400	Weak transcription	HepG2	liver
8	chr9:71558000-71569200	Weak transcription	Right Ventricle	heart
9	chr9:71558200-71579200	Weak transcription	Colonic Mucosa	Colon
10	chr9:71562400-71578000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:71562400-71579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:71563400-71569600	Weak transcription	Brain Germinal Matrix	brain
13	chr9:71563400-71569600	Weak transcription	Spleen	Spleen
14	chr9:71563400-71578400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr9:71564600-71570000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:71565000-71569600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:71565200-71569000	Enhancers	Small Intestine	intestine
18	chr9:71565200-71569600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr9:71565600-71569200	Weak transcription	Fetal Intestine Large	intestine
20	chr9:71565600-71569800	Weak transcription	Left Ventricle	heart
21	chr9:71565600-71587800	Weak transcription	Lung	lung
22	chr9:71565800-71576200	Weak transcription	Fetal Heart	heart
23	chr9:71566200-71568600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:71566400-71567800	Enhancers	Primary hematopoietic stem cells	blood
25	chr9:71566400-71571600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr9:71566600-71568600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:71566600-71569400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:71566600-71571000	Weak transcription	Fetal Intestine Small	intestine
29	chr9:71567000-71567800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:71567200-71568800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:71567200-71574800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:71567400-71568400	Weak transcription	Primary B cells from cord blood	blood
33	chr9:71567400-71568600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:71567400-71569600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:71567400-71569800	Weak transcription	Primary B cells from peripheral blood	blood
36	chr9:71567400-71570600	Enhancers	GM12878-XiMat	blood
37	chr9:71567400-71571400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr9:71567600-71567800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr9:71567600-71568800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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