Variant report

Variant	rs73652405
Chromosome Location	chr9:21453653-21453654
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56073445	1.00[AMR][1000 genomes]
rs56133447	1.00[AMR][1000 genomes]
rs58021384	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7027683	0.83[AFR][1000 genomes]
rs73652411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	esv2752289	chr9:21361957-21499624	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892739	chr9:21407250-21470520	Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21448400-21455400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:21449400-21453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr9:21449600-21453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:21449800-21453800	Weak transcription	NHEK	skin
5	chr9:21450600-21453800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:21451400-21453800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:21451400-21458800	Weak transcription	A549	lung
8	chr9:21451800-21453800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:21451800-21454000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:21451800-21455000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:21451800-21457600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:21452200-21453800	Weak transcription	Osteobl	bone
13	chr9:21452400-21455600	Weak transcription	NHLF	lung
14	chr9:21452800-21453800	Strong transcription	Muscle Satellite Cultured Cells	--
15	chr9:21452800-21454800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:21453000-21453800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:21453000-21455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:21453200-21456200	Strong transcription	NH-A	brain
19	chr9:21453400-21454400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:21453400-21455200	Enhancers	NHDF-Ad	bronchial
21	chr9:21453600-21455000	Enhancers	Hela-S3	cervix
22	chr9:21453600-21455400	Genic enhancers	HMEC	breast

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