Variant report

Variant	rs56133447
Chromosome Location	chr9:21513438-21513439
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr9:21513416-21513832	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr9:21513418-21513843	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr9:21513438-21513821	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr9:21513416-21513802	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr9:21513431-21513786	HCT-116	colon:	n/a	n/a
6	FOS	chr9:21513417-21513900	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MIR31	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56073445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58021384	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7027683	0.81[AFR][1000 genomes]
rs73652405	1.00[AMR][1000 genomes]
rs73652411	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
3	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
4	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
5	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
6	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
7	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
8	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
9	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21507200-21516800	Weak transcription	Small Intestine	intestine
4	chr9:21507200-21551400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:21507400-21527200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:21508000-21542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:21508200-21523200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:21508200-21527600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:21508200-21527600	Weak transcription	Fetal Intestine Small	intestine
10	chr9:21508600-21517600	Weak transcription	Fetal Intestine Large	intestine
11	chr9:21509400-21514200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21509400-21514600	Weak transcription	NHDF-Ad	bronchial
13	chr9:21509800-21514400	Genic enhancers	NHEK	skin
14	chr9:21510000-21514400	Strong transcription	Hela-S3	cervix
15	chr9:21510200-21513800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:21510400-21513800	Genic enhancers	Osteobl	bone
17	chr9:21510400-21527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:21511200-21513800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr9:21511600-21514400	Genic enhancers	HMEC	breast
20	chr9:21512000-21513600	Strong transcription	A549	lung
21	chr9:21512200-21513600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:21512200-21513600	Weak transcription	HUVEC	blood vessel
23	chr9:21512200-21517600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:21512200-21517600	Weak transcription	NH-A	brain
25	chr9:21512200-21526400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:21512200-21526600	Weak transcription	HSMM	muscle
27	chr9:21512600-21516200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:21512800-21527000	Weak transcription	NHLF	lung
29	chr9:21513000-21513600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:21513000-21526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:21513200-21514600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:21513200-21515200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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